Job Description P33195 Confidence 98.12% Date Thu Jan 5 11:51:15 GMT 2012 Rank 233 Aligned Residues 342 % Identity 14% Template c3f6tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution Resolution 2.15 Å

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		528	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.			.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.		.	.	.	.	.	.	.	600	.	.	.	.
Predicted Secondary structure																																						.	.																														.
Query SS confidence																																						.	.																														.
Query Sequence		P	E	F	A	E	L	H	P	F	C	P	P	E	Q	A	E	G	Y	Q	Q	M	I	A	Q	L	A	D	W	L	V	K	L	T	G	Y	D	.	.	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y	A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	.	G	H	R	D	I	C	L	I	P	A	S	A
Query Conservation																																						.	.																														.
Alig confidence																																						.	.											.	.	.																	.
Template Conservation																																																		.	.	.
Template Sequence		N	G	A	V	A	N	N	Y	P	V	P	D	R	C	L	V	N	T	E	K	I	I	N	Y	F	L	Q	E	L	S	Y	K	D	A	N	L	A	E	Q	T	D	L	F	P	T	E	G	G	.	.	.	T	A	A	I	V	Y	A	F	H	S	L	A	E	N	H	L	L	K	K	G	D	K	I	A	I	N	E	P	I
Template Known Secondary structure						T		S			S	S	S	S																		T	T	T				G	G	G										.	.	.														T	T	S	S		T	T							S	S
Template Predicted Secondary structure																																																		.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.				.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		605	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.					630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.		.	.	.	.	.	660			.	.	.	.	.	.	.	.	.	670	.	.	.	.		.	.
Predicted Secondary structure																											.	.	.	.																										.							.	.															.
Query SS confidence																											.	.	.	.																										.							.	.															.
Query Sequence		H	G	T	N	P	A	S	A	H	M	A	G	M	Q	V	V	V	V	A	C	D	K	N	G	N	.	.	.	.	I	D	L	T	D	L	R	A	K	A	E	Q	A	G	D	N	L	S	C	I	M	V	T	Y	P	.	S	T	H	G	V	Y	.	.	E	E	T	I	R	E	V	C	E	V	V	H	Q	F	.	G	G
Query Conservation																											.	.	.	.																										.							.	.															.
Alig confidence																											.	.	.	.												.	.	.												.							.	.															.
Template Conservation																																										.	.	.
Template Sequence		F	T	P	Y	L	R	I	P	E	L	K	D	Y	E	L	V	E	V	D	L	H	S	Y	E	K	N	D	W	E	I	E	P	N	E	I	E	K	L	K	D	.	.	.	P	S	I	K	A	L	I	V	V	N	P	T	N	P	T	S	K	E	F	D	T	N	A	L	N	A	I	K	Q	A	V	E	K	N	P	K	L
Template Known Secondary structure							T	S	G	G	G	G	G	S											T	T	T	T	S											S		.	.	.	T	T								S	S		T	T	T		B																		T	T
Template Predicted Secondary structure																																										.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.				.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		677	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.						.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.
Predicted Secondary structure																																																									.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.
Query Sequence		Q	V	Y	L	D	G	A	N	M	N	A	Q	V	G	I	T	S	P	G	F	I	G	A	D	V	S	H	L	N	L	H	K	T	F	C	I	P	H	G	G	G	G	P	G	M	G	P	I	G	V	K	A	H	L	A	.	.	.	.	.	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A
Query Conservation																																																									.	.	.	.	.
Alig confidence																															.	.						.																			.	.	.	.	.
Template Conservation																															.	.						.
Template Sequence		X	I	I	S	D	E	V	Y	G	A	F	V	P	N	F	K	S	I	Y	S	V	V	P	Y	N	T	X	L	V	.	.	Y	S	Y	S	L	.	F	G	C	T	G	W	R	L	G	V	I	A	L	N	E	K	N	V	F	D	D	N	I	A	H	L	D	K	V	E	L	R	Q	L	H	K	R	Y	S	S	V	V	L
Template Known Secondary structure								T	T	G	G	G	S	T	T								S	G	G	G					.	.						.		S		G	G	G									S	S									T	S														T	T		S
Template Predicted Secondary structure																															.	.						.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.			.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		752	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.																														.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	K	A	S	Q	V	A	I	L	N	A	N	Y	I	A	S	R	L	Q	D	A	F	P	V
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation						.																																																																							.	.
Template Sequence		D	P	D	K	.	X	K	F	I	D	R	L	C	A	D	S	R	S	I	G	L	Y	H	T	A	G	L	S	T	P	Q	Q	I	X	E	A	L	F	S	X	T	H	L	L	T	S	T	N	G	G	S	D	D	P	Y	I	D	I	A	R	K	L	V	S	E	R	Y	D	Q	L	H	D	A	X	Q	.	.	A	P	K
Template Known Secondary structure			G	G	G	.												T	T	T	T	T	G	G	G		S																		T	T		B	G	G	G	T	B																							T	.	.
Template Predicted Secondary structure						.																																																																							.	.
Template SS confidence
		357	.	.	360		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430			.	.	.
		803	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.												.	.	.	830	.	.	.	.	.	.	.	.	.		840	.	.	.	.		.	.	.	.	.	850		.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.														.						.							.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.														.						.							.
Query Sequence		L	Y	T	G	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	.	.	.	.	.	.	.	.	.	.	.	G	I	S	E	L	D	I	A	K	R	L	I	D	.	Y	G	F	H	A	.	P	T	M	S	F	P	.	V	A	G	T	L	M	V	E	P	T	E	S	E	S	K	V	E	L
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.														.						.							.
Alig confidence												.	.													.	.	.	.	.	.	.	.	.	.	.														.						.							.														.
Template Conservation												.	.																																																																.
Template Sequence		D	E	T	D	T	N	T	H	Y	Y	.	.	S	L	I	D	I	Y	R	L	A	E	K	I	Y	G	K	E	F	R	D	Y	L	T	N	N	F	E	Q	V	D	F	L	L	K	L	A	E	K	N	G	V	V	L	V	D	G	V	G	F	G	A	K	P	G	E	L	R	V	S	Q	A	N	L	P	.	T	E	D	Y
Template Known Secondary structure				S	T	T	B			S		.	.																																						T	T	S	S	S		T	T					S	S	T	T						S	S	S	S		.
Template Predicted Secondary structure												.	.																																																																.
Template SS confidence
		434	.	.	.	.	.	440	.	.	.			.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.		.	.	.	510
		869	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	F	I	D	A	M	L	A	I	R	A	E	I	D	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	I	G	K	Q	V	L	E	L	L	K	E	Y	Y	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions