Phyre 2 alignment of P33195 with c3ez1A

Job Description P33195
Confidence 98.71% Date Thu Jan 5 11:51:15 GMT 2012

Rank 228 Aligned Residues 308

% Identity 12% Template c3ez1A_

PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase mocr family; PDBTitle: crystal structure of putative aminotransferase (mocr family)2 (yp_604413.1) from deinococcus geothermalis dsm 11300 at 2.60 a3 resolution

Resolution 2.60 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.							.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.
Query Sequence	Q	L	A	D	W	L	V	K	L	T	G	Y	D	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y	A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	.	.	.	.	.	.	G	H	R	D	I	C	L	I	P	A	S	A	H	G	T	N	P	A	S	A	H	M	A	G	M	Q	V	V	V	V	A	C
Query Conservation																																											.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.
Template Conservation
Template Sequence	S	A	R	A	L	F	A	G	Y	L	D	V	K	A	E	N	V	L	V	W	N	N	S	S	L	E	L	Q	G	L	V	L	T	F	A	L	L	H	G	V	R	G	S	T	G	P	W	L	S	Q	T	P	K	X	I	V	T	V	P	G	Y	D	R	H	F	L	L	L	Q	T	L	G	F	E	L	L	T	V	D	X
Template Known Secondary structure										T	T	S		G	G	G					S	S																T			T	T		S	S		G	G	G	G									S													T
Template Predicted Secondary structure
Template SS confidence
	73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.

	625	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.				.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670		.	.	.	.	.	.	.	.	.	680	.	.	.	.													.	.	.	.
Predicted Secondary structure																												.	.	.																				.															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.																				.															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	D	K	N	G	N	I	D	L	T	D	L	R	A	K	A	E	Q	A	G	D	N	L	S	C	I	M	V	.	.	.	T	Y	P	S	T	H	G	V	Y	E	E	T	I	R	E	V	C	E	V	.	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	N	.	.	.	.	.	.	.	.	.	.	.	.	M	N	A	Q
Query Conservation																												.	.	.																				.															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																							.	.	.																				.															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.
Template Sequence	Q	S	D	G	.	P	D	V	D	A	V	E	R	L	A	G	T	D	P	S	V	K	G	I	L	F	V	P	T	Y	S	N	P	G	G	E	T	I	S	L	E	K	A	R	R	L	A	G	L	Q	A	A	A	P	D	F	T	I	F	A	D	D	A	Y	R	V	H	H	L	V	E	E	D	R	A	E	P	V	N	F
Template Known Secondary structure		T	T		.												S		T	T								S	S	S		T	T	T														T				S	S	T	T								T	T	S	S		B			S	S	S
Template Predicted Secondary structure					.
Template SS confidence
	153	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

	689	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	G	I	T	S	P	G	F	I	G	A	D	V	S	H	L	N	L	H	K	T	F	C	I	P	H	G	G	G	G	P	G	M	G	P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M
Query Conservation
Alig confidence																										.				.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.				.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	V	V	L	A	R	D	A	G	Y	P	D	R	A	F	V	F	A	S	T	S	K	I	T	F	A	.	G	A	G	.	.	.	L	G	F	V	A	S	S	E	D	N	I	R	W	L	S	.	.	.	.	.	.	.	.	.	.	.	.	K	Y	L	G	A	Q	S	I	G	P	N	K	V	E	Q	A	R	H	V	K	F
Template Known Secondary structure								T		T	T	S							S	T	T	T	S		S	.	S	S	S	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.						S		S
Template Predicted Secondary structure																										.				.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.				260	.	.	.	.	.	.	.	.	.	270	.	.	.	.													.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

	769	770	.	.	.	.			.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.						.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.
Predicted Secondary structure							.	.																												.	.	.	.	.
Query SS confidence							.	.																												.	.	.	.	.
Query Sequence	Y	I	R	M	M	G	.	.	A	E	G	L	K	K	A	S	Q	V	A	I	L	N	A	N	Y	I	A	S	R	L	Q	D	A	F	P	.	.	.	.	.	V	L	Y	T	G	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	D	Y	G
Query Conservation							.	.																												.	.	.	.	.
Alig confidence							.	.																												.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.
Template Sequence	L	T	E	Y	P	G	G	L	E	G	L	X	R	D	H	A	A	I	I	A	P	K	F	R	A	V	D	E	V	L	R	A	E	L	G	E	G	G	E	Y	A	T	W	T	L	P	K	G	G	Y	F	I	S	L	D	T	A	.	.	.	.	.	.	.	.	E	P	V	A	D	R	V	V	K	L	A	E	A	A	G
Template Known Secondary structure				S	T	T																													T	T	T	T	S	S							S	B	S	S							S	.	.	.	.	.	.	.	.	S	S												T	T
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.
Template SS confidence
	296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.									.	.	.	.	.	.	.	360	.	.	.	.	.	.	.

	842	.	.		.		.	.	.	.	850	.						.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.
Predicted Secondary structure				.		.							.	.	.	.	.
Query SS confidence				.		.							.	.	.	.	.
Query Sequence	F	H	A	.	P	.	T	M	S	F	P	V	.	.	.	.	.	A	G	T	L	M	V	E	P	T	E	S	E	S	K	V	E	L	D	R	F	I	D	A	M	L	A	I	R	A	E	I	D	Q
Query Conservation				.		.							.	.	.	.	.
Alig confidence				.		.							.	.	.	.	.												.
Template Conservation																													.
Template Sequence	V	S	L	T	P	A	G	A	T	Y	P	A	G	Q	D	P	H	N	R	N	L	R	L	A	P	T	R	P	.	P	V	E	E	V	R	T	A	X	Q	V	V	A	A	C	I	R	L	A	T	E
Template Known Secondary structure						T	T	T	T	S	S	T	T			S	S	S								S	S	S	.
Template Predicted Secondary structure																													.
Template SS confidence
	368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.		.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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