Job Description P33195 Confidence 99.12% Date Thu Jan 5 11:51:15 GMT 2012 Rank 208 Aligned Residues 349 % Identity 13% Template c3eibB_ PDB info PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana Resolution 1.85 Å

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		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.							520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.
Query Sequence		N	Q	A	M	I	P	L	G	S	C	T	M	K	L	N	A	A	.	.	.	.	.	.	A	E	M	I	P	I	T	W	P	E	F	A	E	L	H	P	F	C	P	P	E	Q	A	E	G	Y	Q	Q	M	I	A	Q	L	A	D	W	L	V	K	L	T	G	Y	D	A	V	C	M	Q	P	N	S	G	A	Q	G	E
Query Conservation																			.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.																				.	.	.
Template Conservation																																												.	.	.
Template Sequence		D	A	Q	V	I	S	L	G	I	G	D	T	T	E	P	I	P	E	V	I	T	S	A	M	A	K	K	A	H	E	L	S	T	I	E	G	Y	S	G	Y	G	A	.	.	.	E	Q	G	A	K	P	L	R	A	A	I	A	K	T	F	Y	G	G	L	G	I	G	D	D	D	V	F	V	S	D	G	A	K	C	D
Template Known Secondary structure		T							S	S					S																	T	T	S	T	T	T				S			.	.	.	T	T															T	T	T	T			G	G	G					S
Template Predicted Secondary structure																																												.	.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.				.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		577	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.							.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650
Predicted Secondary structure																																																						.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.
Query Sequence		Y	A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H	G	T	N	P	A	S	A	H	M	A	G	M	Q	V	V	V	V	A	C	D	K	N	G	.	.	.	.	.	.	N	I	D	L	T	D	L	R	A	K	A	E	Q	A	G	D	N	L	S	C	I	M
Query Conservation																																																						.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.																																					.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.
Template Sequence		I	S	R	L	Q	V	M	F	.	.	.	.	.	.	.	.	G	S	N	V	T	I	A	V	Q	D	P	S	Y	P	A	Y	V	D	S	S	V	I	M	G	Q	T	G	Q	F	N	T	D	V	Q	K	Y	G	N	I	E	Y	M	R	C	T	P	E	N	G	F	F	P	D	L	S	T	V	G	R	T	D	I	I	F
Template Known Secondary structure										.	.	.	.	.	.	.	.		T	T								S			T									T	T		S					T	T	T	T			T	T								T	T	T	T	T				G	G	G					S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.									140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		651	.	.	.	.	.	.	.				.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.							.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.
Predicted Secondary structure										.	.	.																										.	.	.	.	.	.
Query SS confidence										.	.	.																										.	.	.	.	.	.
Query Sequence		V	T	Y	P	S	T	H	G	.	.	.	V	Y	E	E	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	.	.	.	.	.	.	N	M	N	A	Q	V	G	I	T	S	P	G	F	I	G	A	D	V	S	H	L	N	L	H	K	T	F	C	I	P	H	G	G	G	G	P	G	M
Query Conservation										.	.	.																										.	.	.	.	.	.
Alig confidence										.	.	.																										.	.	.	.	.	.																															.	.	.	.
Template Conservation																																																																										.	.	.	.
Template Sequence		F	C	S	P	N	N	P	T	G	A	A	A	T	R	E	Q	L	T	Q	L	V	E	F	A	K	K	N	G	S	I	I	V	Y	D	S	A	Y	A	M	Y	M	S	D	D	N	P	R	S	I	F	E	I	P	G	A	E	E	V	A	M	E	T	A	S	F	S	N	Y	A	G	F	T	.	.	.	.	G	V	R	L
Template Known Secondary structure				S	S		T	T	T																				T								T	T	G	G	G			S	S			S	S	G	G	G	S	T	T	G	G	G	T							S					S	T	T	.	.	.	.	T	T
Template Predicted Secondary structure																																																																										.	.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.					.	.	.	.
		722	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E	G	L	K	K	A	S	Q	V	A	I	L	N	A	N	Y	I	A	S	R	L	Q	D	A	F	P
Query Conservation
Alig confidence																				.	.	.	.	.																																																								.
Template Conservation																				.	.	.	.	.																																																								.
Template Sequence		G	W	T	V	I	P	K	K	L	L	Y	S	D	G	F	P	V	A	.	.	.	.	.	K	D	F	N	R	I	I	C	T	C	F	N	G	A	S	N	I	S	Q	A	G	A	L	A	C	L	T	P	E	G	L	E	A	M	H	K	V	I	G	F	Y	K	E	N	T	N	I	I	I	D	T	F	T	S	L	.	G
Template Known Secondary structure								T	T		B		T	T	S		B			.	.	.	.	.														S												S	S																												T	.	T
Template Predicted Secondary structure																				.	.	.	.	.																																																								.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.						.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.		.
		802	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.		.	.	.	.	.	850	.			.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.								.	.
Query SS confidence																																													.								.	.
Query Sequence		V	L	Y	T	G	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	D	Y	G	F	H	A	.	P	T	M	S	F	P	V	.	.	A	G	T	L	M	V	E	P	T	E	S	E	S	K	V	E	L	D	R	F	I	D	A	M	L	A	I
Query Conservation																																													.								.	.
Alig confidence													.	.							.	.	.	.	.																				.								.	.									.	.
Template Conservation													.	.							.	.	.	.	.																																						.	.
Template Sequence		Y	D	V	Y	G	G	K	N	A	P	Y	.	.	V	W	V	H	F	P	.	.	.	.	.	N	Q	S	S	W	D	V	F	A	E	I	L	E	K	T	H	V	V	T	T	P	G	S	G	F	G	P	G	G	E	G	F	V	R	V	S	A	.	.	F	G	H	R	E	N	I	L	E	A	C	R	R	F	K	Q	L
Template Known Secondary structure								S	S	S	S		.	.						T	.	.	.	.	.	T	S																				G	G	G	G		G	G	G	T	T							.	.		S
Template Predicted Secondary structure													.	.							.	.	.	.	.																																						.	.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.			.	.	.	.	.	370						.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.			.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
		879	880	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	K	H
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		425	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions