Job Description P33195 Confidence 99.44% Date Thu Jan 5 11:51:15 GMT 2012 Rank 152 Aligned Residues 352 % Identity 16% Template c3cbfA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alpha-aminodipate aminotransferase; PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27 Resolution 1.67 Å

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		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.			.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.					.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
Predicted Secondary structure																											.	.																					.	.	.	.
Query SS confidence																											.	.																					.	.	.	.
Query Sequence		M	M	R	Y	M	H	S	L	E	R	K	D	L	A	L	N	Q	A	M	I	P	L	G	S	C	.	.	T	M	K	L	N	A	A	A	E	M	I	P	I	T	W	P	E	F	A	E	.	.	.	.	L	H	P	F	C	P	P	E	Q	A	E	G	Y	Q	Q	M	I	A	Q	L	A	D	W	L	V	K	L	T	G
Query Conservation																											.	.																					.	.	.	.
Alig confidence													.	.	.	.	.										.	.																					.	.	.	.							.	.	.																.	.	.	.
Template Conservation													.	.	.	.	.																																										.	.	.																.	.	.	.
Template Sequence		T	I	R	E	L	L	K	L	T	Q	R	.	.	.	.	.	P	G	I	L	S	F	A	G	G	L	P	A	P	E	L	F	P	K	E	E	A	A	E	A	A	A	R	I	L	R	E	K	G	E	V	A	L	Q	Y	S	P	.	.	.	T	E	G	Y	A	P	L	R	A	F	V	A	E	W	I	.	.	.	.	G
Template Known Secondary structure											T	S	.	.	.	.	.	T	T					S	S					G	G	G	S																					T	S				.	.	.	T	T														.	.	.	.	T
Template Predicted Secondary structure													.	.	.	.	.																																										.	.	.																.	.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.						.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.				.	.	.	.	.	.	.	80	.	.	.	.	.	.	.					.
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y	A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H	G	T	N	P	A	S	A	H	M	A	G	M	Q	V	V	V	V	A	C	D	K	N	G	N	I	D	L	T	D	L	R	A	K	A	E	Q
Query Conservation
Alig confidence																										.	.	.	.	.	.	.																																				.
Template Conservation																										.	.	.	.	.	.	.																																				.
Template Sequence		V	R	P	E	E	V	L	I	T	T	G	S	Q	Q	A	L	D	L	V	G	K	V	F	L	.	.	.	.	.	.	.	D	E	G	S	P	V	L	L	E	A	P	S	Y	M	G	A	I	Q	A	F	R	L	Q	G	P	R	F	L	T	V	P	A	G	E	E	.	G	P	D	L	D	A	L	E	E	V	L	K	R
Template Known Secondary structure		S		G	G	G					S	S														.	.	.	.	.	.	.		T	T								S											T	T											T	T	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.																																				.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.								.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160
		642	.	.	.	.	.	.	.	650	.			.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.										.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710
Predicted Secondary structure												.	.																																	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.																																	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	D	N	L	S	C	I	M	V	.	.	T	Y	P	S	T	H	G	V	Y	E	E	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	.	.	.	.	.	.	.	.	.	N	M	N	A	Q	V	G	I	T	S	P	G	F	I	G	A	D	V	S	H	L	N	L	H	K	T	F
Query Conservation												.	.																																	.	.	.	.	.	.	.	.	.
Alig confidence												.	.																																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	R	P	R	F	L	Y	L	I	P	S	F	Q	N	P	T	G	G	L	T	P	L	P	A	R	K	R	L	L	Q	M	V	M	E	R	G	L	V	V	V	E	D	D	A	Y	R	E	L	Y	F	G	E	A	R	L	P	S	L	F	E	L	A	R	E	A	G	Y	P	G	V	I	Y	L	G	S	F	S	K	V	L
Template Known Secondary structure					S							B	S		T	T	T			B																	T								T	T	T	T		B		S	S														T										S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		711	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790
Predicted Secondary structure
Query SS confidence
Query Sequence		C	I	P	H	G	G	G	G	P	G	M	G	P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E	G	L	K	K	A	S	Q	V	A	I	L	N	A	N
Query Conservation
Alig confidence		.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	S	P	G	L	R	V	A	F	A	V	A	H	P	E	A	L	Q	K	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	K	Q	G	A	D	L	H	T	P	M	L	N	Q	M	L	V	H	E	L	L	K	E	G	F	S	E	R	L	E	R	V	R	R	V	Y	R	E	K	A	Q
Template Known Secondary structure		.	.	.	.	.		S	T	T																	.	.	.	.	.	.	.	.	.	.	.	.	.								S	S														T	T	T
Template Predicted Secondary structure		.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
							241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260														.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		791	.	.	.	.	.	.	.	.			800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.		.	.	.	.	.	850	.					.	.	.	.	.	.	.	.	860	.	.	.
Predicted Secondary structure											.	.																																														.								.	.	.	.
Query SS confidence											.	.																																														.								.	.	.	.
Query Sequence		Y	I	A	S	R	L	Q	D	A	.	.	F	P	V	L	Y	T	G	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	D	Y	G	F	H	A	.	P	T	M	S	F	P	V	.	.	.	.	A	G	T	L	M	V	E	P	T	E	S	E
Query Conservation											.	.																																														.								.	.	.	.
Alig confidence											.	.																				.	.	.	.	.	.	.																				.								.	.	.	.										.
Template Conservation																																.	.	.	.	.	.	.																																									.
Template Sequence		A	M	L	H	A	L	D	R	E	V	P	K	E	V	R	Y	T	R	P	K	G	G	M	F	V	W	M	E	L	P	.	.	.	.	.	.	.	K	G	L	S	A	E	G	L	F	R	R	A	L	E	E	N	V	A	F	V	P	G	G	P	F	F	A	N	G	G	G	E	N	T	L	R	L	S	Y	A	.	T	L
Template Known Secondary structure											S		T	T	S						S	B	S	S								.	.	.	.	.	.	.	T	T													T	T						S	G	G	G		T	T	S			T	T							S	.	S	S
Template Predicted Secondary structure																																.	.	.	.	.	.	.																																									.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.								.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.		.	.
		864	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	V	E	L	D	R	F	I	D	A	M	L	A	I	R	A	E	I	D	Q	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	R	E	G	I	A	E	G	V	R	R	L	G	R	A	L	K	G	L	L	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions