Job Description P33195 Confidence 99.84% Date Thu Jan 5 11:51:15 GMT 2012 Rank 35 Aligned Residues 354 % Identity 16% Template c3caiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein Resolution 1.80 Å

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		501	.	.	.	.	.	.	.	.			510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.			.	.	.	.	.	.	570	.	.	.	.	.	.
Predicted Secondary structure											.	.																																																							.	.
Query SS confidence											.	.																																																							.	.
Query Sequence		A	L	N	Q	A	M	I	P	L	.	.	G	S	C	T	M	K	L	N	A	A	A	E	M	I	P	I	T	W	P	E	F	A	E	L	H	P	F	C	P	P	E	Q	A	E	G	Y	Q	Q	M	I	A	Q	L	A	D	W	L	V	K	L	T	G	Y	D	.	.	A	V	C	M	Q	P	N	S	G	A	Q	G	E
Query Conservation											.	.																																																							.	.
Alig confidence											.	.																									.																														.	.
Template Conservation																																					.
Template Sequence		S	L	G	D	G	W	V	H	F	D	A	P	A	G	M	L	I	P	D	S	V	A	T	T	V	S	T	A	F	R	R	S	G	A	S	.	T	V	G	A	H	P	S	A	R	R	S	A	A	V	L	D	A	A	R	E	A	V	A	D	L	V	N	A	D	P	G	G	V	V	L	G	A	D	R	A	V	L	L	S
Template Known Secondary structure		T	T	T	S	S					B	G	G	G																					S	S	.	S		S	S	S																						T			G	G	G					S
Template Predicted Secondary structure																																					.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		577	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610					.	.	.	.	.	.	.	.	.	620	.	.	.	.	.		.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.
Predicted Secondary structure																																				.	.	.	.																.
Query SS confidence																																				.	.	.	.																.
Query Sequence		Y	A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H	G	T	N	P	A	.	.	.	.	S	A	H	M	A	G	M	Q	V	V	V	V	A	C	D	.	K	N	G	N	I	D	L	T	D	L	R	A	K	A	E	Q	A	G	D	N	L	S	C	I	M	V
Query Conservation																																				.	.	.	.																.
Alig confidence		.									.	.	.	.	.																					.	.	.	.																.																.	.	.
Template Conservation		.									.	.	.	.	.																																																								.	.	.
Template Sequence		.	L	L	A	E	A	S	S	S	.	.	.	.	.	R	A	G	L	G	Y	E	V	I	V	S	R	L	D	D	E	A	N	I	A	P	W	L	R	A	A	H	R	Y	G	A	K	V	K	W	A	E	V	D	I	E	T	G	E	L	P	T	W	Q	W	E	S	L	I	S	.	.	.	K	S	T	R	L	V	A	V
Template Known Secondary structure		.						T	G	G	.	.	.	.	.	G	G	B	T	T							T	T	S		G	G	G	T											B										T	T	T					G	G	G							.	.	.	T	T
Template Predicted Secondary structure		.									.	.	.	.	.																																																								.	.	.
Template SS confidence
			93	.	.	.	.	.	.	100						.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.
		652	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	P	S	T	H	G	V	Y	E	E	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	N	M	N	A	Q	V	G	I	T	S	P	G	F	I	G	A	D	V	S	H	L	N	L	H	K	T	F	C	I	P	H	G	G	G	G	P	G	M	G	P	I	G	V	K	A	H	L	A
Query Conservation
Alig confidence																																													.																.	.	.	.	.	.
Template Conservation																																													.																.	.	.	.	.	.
Template Sequence		N	S	A	S	G	T	L	G	G	V	T	D	L	R	A	M	T	K	L	V	H	D	V	G	A	L	V	V	V	D	H	S	A	A	A	P	Y	R	L	L	D	I	R	.	E	T	D	A	D	V	V	T	V	N	A	H	A	W	G	.	.	.	.	.	.	G	P	P	I	G	A	M	V	F	R	D	P	S	V	M
Template Known Secondary structure			S	B		T	T	T		B	B													T	T								T	T	T	T	T	T							.					S						G	G	G	G	T	.	.	.	.	.	.	S		S							S
Template Predicted Secondary structure																																													.																.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.							.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		732	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.												770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	.	.	.	.	.	.	.	.	.	.	.	I	R	M	M	G	A	E	G	L	K	K	A	S	Q	V	A	I	L	N	A	N	Y	I	A	S	R	L	Q	D	A	F
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.																																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.
Template Sequence		N	S	F	G	S	.	V	S	T	N	P	Y	A	T	G	P	A	R	L	E	I	G	V	H	Q	F	G	L	L	A	G	V	V	A	S	I	E	Y	L	A	A	L	D	E	S	A	R	G	S	R	R	E	R	L	A	V	S	M	Q	S	A	D	A	Y	L	N	R	V	F	D	Y	L	M	V	S	L	R	S	L	P
Template Known Secondary structure			T	S			.			S		T	T			G	G	G	G	G			S																			T	S	S	T	T			S	S																													T		T
Template Predicted Secondary structure							.
Template SS confidence
		237	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		801	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.											.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	L	Y	T	G	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	D	Y	G	F	H	A	P	T	M	S	.	.	.	.	.	.	.	.	.	.	F	P	V	A	G	T	L	M	V	E	P	T	E	S	E	S	K	V	E	L	D	R
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.
Template Sequence		L	V	M	L	I	G	R	P	E	A	Q	I	P	V	V	S	F	A	V	H	.	.	.	.	.	.	K	V	P	A	D	R	V	V	Q	R	L	A	D	N	G	I	L	A	I	A	N	T	G	S	R	V	L	D	V	L	G	V	N	D	V	G	G	A	V	T	V	G	L	A	H	Y	S	T	M	A	E	V	D	Q
Template Known Secondary structure		T								S	S	B		S							T	.	.	.	.	.	.	T	B												T	T								S								T	T	T	T	T	T									T	T
Template Predicted Secondary structure																						.	.	.	.	.	.
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.							.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		871	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	D	A	M	L	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	R	A	L	A	S	L
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions