Job Description P33195 Confidence 99.44% Date Thu Jan 5 11:51:15 GMT 2012 Rank 151 Aligned Residues 285 % Identity 15% Template c3aemD_ PDB info PDB header:lyase Chain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate Resolution 2.20 Å

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		551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610					.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.
Query SS confidence																																																														.	.	.	.
Query Sequence		Q	L	A	D	W	L	V	K	L	T	G	Y	D	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y	A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H	G	T	N	P	A	.	.	.	.	S	A	H	M	A	G	M	Q	V	V	V	V	A	C	D	K
Query Conservation																																																														.	.	.	.
Alig confidence																												.								.	.	.	.	.	.	.	.																			.	.	.	.																.
Template Conservation																												.								.	.	.	.	.	.	.	.																																						.
Template Sequence		Q	F	E	E	M	V	C	S	I	E	G	A	A	G	S	A	A	F	G	S	G	M	G	A	I	S	.	S	S	T	L	A	F	L	.	.	.	.	.	.	.	.	Q	K	G	D	H	L	I	A	G	D	T	L	Y	G	C	T	V	S	L	F	T	H	W	L	P	R	F	G	I	E	V	D	L	I	D	T	S	.
Template Known Secondary structure												T		S						S	S							.				T	T	T		.	.	.	.	.	.	.	.		T	T							S	S																T	T								T	T	.
Template Predicted Secondary structure																												.								.	.	.	.	.	.	.	.																																						.
Template SS confidence
		1563	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.		.	1590	.	.	.	.	.									.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.
		627	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.		.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		N	G	N	I	D	L	T	D	L	R	A	K	A	E	Q	A	G	D	N	L	S	C	I	M	V	T	Y	P	.	S	T	H	G	V	Y	E	E	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	N	M	N	A	Q	V	G	I	T	S	P	G	F	I	G	A	D	V	S	H	L	N
Query Conservation																														.
Alig confidence		.	.	.	.											.	.	.												.									.																						.	.
Template Conservation		.	.	.	.											.	.	.																					.																						.	.
Template Sequence		.	.	.	.	D	V	E	K	V	K	A	A	W	K	.	.	.	P	N	T	K	M	V	Y	L	E	S	P	A	N	P	T	C	K	V	S	D	.	I	K	G	I	A	V	V	C	H	E	R	G	A	R	L	V	V	D	A	T	F	.	.	T	S	P	C	F	L	K	P	L	E	L	G	A	D	I	A	L	H	S
Template Known Secondary structure		.	.	.	.	S										.	.	.	T	T								S	S		T	T	T						.												T								T	T	.	.	T		T	T	T			G	G	G	G	T		S
Template Predicted Secondary structure		.	.	.	.											.	.	.																					.																						.	.
Template SS confidence
						1633	.	.	.	.	.	.	1640	.	.				.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.		.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.			.	.	.	.	.	.	1690	.	.	.	.	.	.	.	.	.	1700	.	.
		706	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	K	T	F	C	I	P	H	G	G	G	G	P	G	M	G	P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E	G	L	K	K	A	S	Q	V	A
Query Conservation
Alig confidence															.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	S	K	Y	I	N	G	H	G	D	V	I	G	.	.	.	G	V	S	S	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	E	D	I	A	T	I	K	F	Y	R	K	D	A	G	S	L	M	A	P	M	D	A	F	L	C	A	R	G	M	K	T	L	P	I	R	M	Q	I	H
Template Known Secondary structure		T	T	T	T	T	T		S	S	S				.	.	.						S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																															T	T
Template Predicted Secondary structure															.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1703	.	.	.	.	.	.	1710	.	.	.	.	.				.	.	.	.	1720	.																		.	.	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.	.	.	.	.	.	.	.	.	1750	.	.	.	.	.	.	.	.	.	1760	.	.
		786	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.							.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.
Predicted Secondary structure																																												.	.	.	.	.	.																									.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.																									.	.	.	.	.	.	.	.
Query Sequence		I	L	N	A	N	Y	I	A	S	R	L	Q	D	A	F	P	V	L	Y	T	G	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	.	.	.	.	.	.	I	S	E	L	D	I	A	K	R	L	I	D	Y	G	F	H	A	P	T	M	S	F	P	V	.	.	.	.	.	.	.	.
Query Conservation																																												.	.	.	.	.	.																									.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.													.												.	.	.	.	.	.	.	.
Template Conservation																																																														.
Template Sequence		M	E	N	G	L	K	V	A	K	F	L	E	Q	H	E	K	I	V	K	V	N	H	P	G	L	E	S	F	P	G	H	D	I	A	K	K	Q	M	T	G	Y	G	S	T	F	L	F	E	M	K	S	F	E	A	A	K	K	L	M	E	.	H	L	K	V	C	T	L	A	V	S	L	G	C	V	D	T	L	I	E
Template Known Secondary structure														T		T	T							T	T	S	T	T	S	T	T									S	S			S							S	S									T	.	S		S	S	S				S					S	S
Template Predicted Secondary structure																																																														.
Template SS confidence
		1763	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.	.	.	.	1820	.	.		.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.
																							852	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	T	L	M	V	E	P	T	E	S	E	S	K	V	E	L	D	R	F	I	D	A	M	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	P	A	S	M	T	H	A	A	V	P	E	N	I	M	R	K	Q	G	I	T	P	E	L	V	R	I	S	V	G	I	E	N	V	D	D	I	I	A	D	L	K	Q	A	L	E
Template Known Secondary structure			T	T	T	T	T	T	T	T	S									T			T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		1842	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions