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Job DescriptionP33195
Confidence98.40%DateThu Jan 5 11:51:15 GMT 2012
Rank232Aligned Residues304
% Identity14%Templatec2zy3A_
PDB info PDB header:lyaseChain: A: PDB Molecule:l-aspartate beta-decarboxylase; PDBTitle: dodecameric l-aspartate beta-decarboxylase
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   575....580.........590.. .......600.........610.... .....620......... 630.........640.........
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Query Sequence  GEYAGLLAIRHYHESRNE. GHRDICLIPASAHGTNPASAHM. . AGMQVVVVACDKNGN. . IDLTDLRAKAEQAGDNLSCI
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Template Sequence  GGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD. . . PAIKIF
Template Known Secondary structure  TTSS
TT
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TSTTSTTT


BGGGTSB

GGGG
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   173......180.........190.........200.........210.........220.........230.........240... ......
 
   650. ........660.........670..... ....680.........690.........700.........710.........720....
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Query Sequence  MV. . . TYPSTHGVYEETIREVCEVVHQFG. . GQVYLDGANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPI
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Template Sequence  FCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENT. LLV. YSFSKYFGATGWRLGVV
Template Known Secondary structure  SS
SSS
B


T
TT

TTGGGSSS



GGG..STTTTT
GGG

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   250.........260.........270.........280.........290.........300....... ..310 .........320.......
 
   725....730. ........740.........750.........760.........770..... .
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Query Sequence  GVKAHLA. . . . . . . . . . . . . . . . . . . . . . . . . . PFVPGHSVVQIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGA. . E
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Template Sequence  AAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADE
Template Known Secondary structure  SS
SS
TTTT
S
GGG

TTTTTTGGG
SS

TT
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   328.330.........340.........350.........360.........370.........380.........390.........400.......
 
   777..780.........790.........800.........810.........820...... ...830......... 840....
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Query Sequence  GLKKASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEET. . . . . . . . . . . GISELDIAKRLID. YGFHA
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Template Sequence  YKHTLKQLIRRRETTLYRELGMPPL. . RDENAVDYY. . TLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVL
Template Known Secondary structure  TTTTTS


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   408.410.........420.........430.. .......440. ........450.........460.........470.........480...
 
   845....850 .........860.........870.........880........
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Query Sequence  . PTMSFP. VAGTLMVEPTESESKVELDRFIDAMLAIRAEIDQVKAG
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Template Sequence  LPGRGFGSNRPSGRASLA. NLNEYEYAAIGRALRKMADELYAEYSG
Template Known Secondary structure 

SS
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SS.SS

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   484.....490.........500. ........510.........520........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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