Job Description P33195 Confidence 99.58% Date Thu Jan 5 11:51:15 GMT 2012 Rank 110 Aligned Residues 340 % Identity 16% Template c2zsmA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase; PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-2 aminomutase from aeropyrum pernix, hexagonal form Resolution 2.30 Å

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		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	A	L	N	Q	A	M	I	P	L	G	S	C	T	M	K	L	N	A	A	A	E	M	I	P	I	T	W	P	E	F	A	E	L	H	P	F	C	P	P	E	Q	A	E	G	Y	Q	Q	M	I	A	Q	L	A	D	W	L	V	K	L	T	G	Y	D	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y	A
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	L	V	L	A	Y	G	P	L	I	L	G	H	K	H	P	R	V	L	E	A	V	E	E	A	L	A	R	G	W	L	Y	G	A	P	G	E	A	E	V	.	.	.	.	.	.	.	.	.	.	.	.	L	L	A	E	K	I	L	G	Y	V	K	R	G	G	M	I	R	F	V	N	S	G	T	E	A	T	M	T
Template Known Secondary structure			S	S	G	G	G	T	T		T	T		B	S													T	T		S			S	S			S				.	.	.	.	.	.	.	.	.	.	.	.												T	T							S	S
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.													100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		579	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.														.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H	G	T	N	P	A	S	A	H	M	A	G	M	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	V	V	A	C	D	K	N	G	N	I	D	L	T	D	L	R	A	K	A	E	Q	A	G	D	N
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Template Conservation											.	.	.	.	.																																															.	.	.	.	.
Template Sequence		A	I	R	L	A	R	G	Y	T	.	.	.	.	.	G	R	D	L	I	L	K	F	D	G	C	Y	H	G	S	H	D	A	V	L	V	A	A	G	G	V	P	T	S	A	G	V	P	E	A	V	A	R	L	T	L	V	T	P	Y	N	.	.	.	.	.	D	V	E	A	L	E	R	V	F	A	E	Y	G	D	R
Template Known Secondary structure											.	.	.	.	.										T					S	S	G	G	G	S								S	S	T	T							T	T						T	T	.	.	.	.	.													G	G	G
Template Predicted Secondary structure											.	.	.	.	.																																															.	.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.						.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.						.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		646	.	.	.	650	.	.	.		.	.	.	.	.	.	660	.	.				.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.				.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.
Predicted Secondary structure										.										.	.	.																																				.	.	.
Query SS confidence										.										.	.	.																																				.	.	.
Query Sequence		L	S	C	I	M	V	T	Y	.	P	S	T	H	G	V	Y	E	E	.	.	.	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	N	M	N	A	Q	V	G	I	T	S	P	G	F	I	.	.	.	G	A	D	V	S	H	L	N	L	H	K	T	F	C	I	P	H	G	G	G	G
Query Conservation										.										.	.	.																																				.	.	.
Alig confidence										.										.	.	.																																				.	.	.													.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.
Template Sequence		I	A	G	V	I	V	E	P	V	I	A	N	A	G	V	I	P	P	R	R	E	F	L	A	A	L	Q	R	L	S	R	E	S	G	A	L	L	I	L	D	E	V	V	T	G	F	R	L	G	L	E	G	A	Q	G	Y	F	N	I	E	G	D	I	I	V	L	G	K	I	I	G	.	.	.	.	.	.	.	G	G
Template Known Secondary structure									S	S	B		S	S	S		B																		T								T	T	T	T	T	T	S	S	T	T							T				S						G	G	G	G	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.								.	.
		719	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.		.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		P	G	M	G	P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E	G	L	.	K	K	A	S	Q	V	A	I	L	N	A	N	Y	I	A	S	R	L	Q
Query Conservation																																																														.
Alig confidence																		.	.	.	.	.	.	.	.	.	.																																			.
Template Conservation																		.	.	.	.	.	.	.	.	.	.
Template Sequence		F	P	V	G	A	V	A	G	S	R	E	V	M	S	L	L	.	.	.	.	.	.	.	.	.	.	T	P	Q	G	K	V	F	N	A	G	T	F	N	A	H	P	I	T	M	A	A	G	L	A	T	L	K	A	L	E	E	E	P	V	Y	S	V	S	R	E	A	A	K	A	L	E	E	A	A	S	E	V	L	D
Template Known Secondary structure		S	S												T	T	B	.	.	.	.	.	.	.	.	.	.	T	T	T	S	S	B					T	T	T	T																		S																						T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.											.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		798	.	800	.	.	.	.	.	.	.	.	.						810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.
Predicted Secondary structure														.	.	.	.	.
Query SS confidence														.	.	.	.	.
Query Sequence		D	A	F	P	V	L	Y	T	G	R	D	G	.	.	.	.	.	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	D	Y	G	F	H	A	P	T	M	S	F	P	V	A	G	T	L	M	V	E	P	T	E	S	E	S	K	V	E	L	D	R	F	I
Query Conservation														.	.	.	.	.
Alig confidence														.	.	.	.	.																																					.	.	.	.		.
Template Conservation																																																							.	.	.	.		.
Template Sequence		R	T	G	L	P	Y	T	I	N	R	V	E	S	M	M	Q	L	F	I	G	V	E	E	V	S	N	A	A	Q	A	R	K	A	D	K	K	F	Y	V	K	L	H	E	E	M	L	R	R	G	V	F	I	A	.	.	.	.	P	.	S	N	L	E	A	V	F	T	G	L	P	H	Q	G	E	A	L	E	I	A	V
Template Known Secondary structure		T	S	S									T	T							T		S			S	S					T	T	S															T	T					.	.	.	.	S	.	S	T	T	S						T	T		S
Template Predicted Secondary structure																																																							.	.	.	.		.
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.					400		.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
		873	.	.	.	.	.	.	880	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	M	L	A	I	R	A	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	L	R	S	S	L	K	T	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		422	.	.	.	.	.	.	.	430	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions