Phyre 2 alignment of P33195 with c2x5dD

Job Description P33195
Confidence 99.46% Date Thu Jan 5 11:51:15 GMT 2012

Rank 142 Aligned Residues 340

% Identity 17% Template c2x5dD_

PDB info PDB header:transferase Chain: D: PDB Molecule:probable aminotransferase; PDBTitle: crystal structure of a probable aminotransferase from2 pseudomonas aeruginosa

Resolution 2.25 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	505	.	.	.	.	510	.	.	.	.	.	.	.			.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.					.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.																																															.	.	.	.
Query SS confidence														.	.																																															.	.	.	.
Query Sequence	A	M	I	P	L	G	S	C	T	M	K	L	N	.	.	A	A	A	E	M	I	P	I	T	W	P	E	F	A	E	L	H	P	F	C	P	P	E	Q	A	E	G	Y	Q	Q	M	I	A	Q	L	A	D	W	L	V	K	L	T	G	Y	D	.	.	.	.	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y	A
Query Conservation														.	.																																															.	.	.	.
Alig confidence														.	.																						.	.	.																							.	.	.	.
Template Conservation																																					.	.	.
Template Sequence	D	I	I	D	L	S	M	G	N	P	D	G	P	T	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	E	D	T	H	G	Y	S	T	.	.	.	S	R	G	I	P	R	L	R	R	A	I	S	H	W	Y	R	D	R	Y	D	V	Q	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E	G	L	A	H
Template Known Secondary structure						S						S																S	T	T			S				.	.	.	T	T																							T	T	T	S					S	S
Template Predicted Secondary structure																																					.	.	.
Template SS confidence
	37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.				.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.

	579	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H	G	T	N	P	A	S	A	H	M	A	G	M	Q	V	V	V	V	A	C	D	K	N	G	N	I	D	L	T	D	L	R	A	K	A	E	Q	A	G	D	N	L	S	C	I	M	V	T	Y	P	S	T	H	G
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.																																						.
Template Conservation							.	.	.	.	.	.	.	.																																						.
Template Sequence	L	M	L	A	T	L	.	.	.	.	.	.	.	.	D	H	G	D	T	I	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	V	I	A	G	A	Q	V	R	S	V	P	L	V	P	G	I	D	.	F	F	N	E	L	E	R	A	I	R	E	S	I	P	K	P	R	M	M	I	L	G	F	P	S	N	P	T
Template Known Secondary structure							.	.	.	.	.	.	.	.		T	T								S			T									T	T									S	T	T	S		.											T	S	S	S			S						S	S		T	T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.																																						.
Template SS confidence
	114	.	.	.	.	.									120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

	659	660	.				.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.								.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.																							.	.	.	.	.	.	.
Query SS confidence				.	.	.																							.	.	.	.	.	.	.
Query Sequence	V	Y	E	.	.	.	E	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	.	.	.	.	.	.	.	N	M	N	A	Q	V	G	I	T	S	P	G	F	I	G	A	D	V	S	H	L	N	L	H	K	T	F	C	I	P	H	G	G	G	G	P	G	M	G	P	I	G	V	K	A
Query Conservation				.	.	.																							.	.	.	.	.	.	.
Alig confidence				.	.	.																							.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	Q	C	V	E	L	D	F	F	E	R	V	V	A	L	A	K	Q	Y	D	V	M	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	K	D	I	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W	R	I	G	F	M	V	G	N	P	E	L	V	S
Template Known Secondary structure																				T								T	T	T	T		B		T	T						G	G	G	S	T	T	G	G	G	T							S	T	T	T	T	T			S
Template Predicted Secondary structure
Template SS confidence
	185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

	729	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E	G	L	K	K	A	S	Q	V	A	I	L	N	A	N	Y	I	A	S	R	L	Q	D	A	F	P	V	L	Y	T	G	R	D
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	A	L	A	R	I	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	G	D	Q	Q	C	V	R	D	I	A	R	Q	Y	Q	Q	R	R	D	V	L	V	K	G	L	R	E	A	G	W	M	V	E	N	P	K	A
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T		S	S	S													S	S																										T	T							S	B
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	265	.	.	.	.	270	.																			.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.

	809	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.		.	840	.	.	.	.		.	.	.	.	.	850			.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.
Predicted Secondary structure																															.							.							.	.
Query SS confidence																															.							.							.	.
Query Sequence	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	.	D	Y	G	F	H	A	.	P	T	M	S	F	P	.	.	V	A	G	T	L	M	V	E	P	T	E	S	E	S	K	V	E	L	D	R	F	I	D	A	M	L	A	I	R	A	E
Query Conservation																															.							.							.	.
Alig confidence				.	.	.											.	.													.							.							.	.											.	.
Template Conservation				.	.	.											.	.																																							.	.
Template Sequence	S	M	Y	.	.	.	V	W	A	K	I	P	E	P	Y	A	.	.	H	L	G	S	L	E	F	A	K	K	L	L	Q	D	A	K	V	S	V	S	P	G	I	G	F	G	D	Y	G	D	D	H	V	R	F	A	L	I	.	.	E	N	R	D	R	L	R	Q	A	V	R	G	I	K	A	M	F	R	A
Template Known Secondary structure	S	S		.	.	.											.	.	T	T																				G	G	G	G		G	G	G	T	T								.	.	S
Template Predicted Secondary structure				.	.	.											.	.																																							.	.
Template SS confidence
	327	.	.				330	.	.	.	.	.	.	.	.	.			340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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