Job Description P33195 Confidence 99.75% Date Thu Jan 5 11:51:15 GMT 2012 Rank 67 Aligned Residues 316 % Identity 16% Template c2r0tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase; PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine Resolution 1.90 Å

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		547	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	M	I	A	Q	L	A	D	W	L	V	K	L	T	G	Y	D	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y	A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H	G	T	N	P	A	S	A	H	M	A	G	M	Q	V	V	V	V	A	C	D	K
Query Conservation
Alig confidence																								.																								.
Template Conservation																								.																								.
Template Sequence		E	Y	V	K	Q	Y	E	T	Q	F	A	K	T	F	G	S	K	Y	A	V	M	V	.	S	S	G	S	T	A	N	L	L	M	I	A	A	L	F	F	T	K	K	P	R	L	K	.	K	G	D	E	I	I	V	P	A	V	S	W	S	T	T	Y	Y	P	L	Q	Q	Y	G	L	R	V	K	F	V	D	I	D	I
Template Known Secondary structure																T		S						.	S													T	T	S	S	S	S		S			.	T	T							S		S											T	T								B		T
Template Predicted Secondary structure																								.																								.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		627		.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		N	.	G	N	I	D	L	T	D	L	R	A	K	A	E	Q	A	G	D	N	L	S	C	I	M	V	T	Y	P	S	T	H	G	V	Y	E	E	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	N	M	N	A	Q	V	G	I	T	S	P	G	F	I	G	A	D	V	S	H	L	N
Query Conservation			.
Alig confidence			.														.	.	.													.	.						.
Template Conservation																	.	.	.													.	.						.
Template Sequence		N	T	L	N	I	D	I	E	S	L	K	E	A	V	T	.	.	.	D	S	T	K	A	I	L	T	V	N	L	L	.	.	G	N	P	N	N	.	F	D	E	I	N	K	I	I	G	G	R	D	I	I	L	L	E	D	N	C	E	S	M	G	A	T	F	N	N	K	C	A	G	T	F	G	L	M	G	T	F	S
Template Known Secondary structure		T	T		S	B											.	.	.	S	S									B	T	.	.	T	B				.									T	T	S	S								T	T		T	T				T	T			T	T	S	S	S	S
Template Predicted Secondary structure																	.	.	.													.	.						.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.				.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		706	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.														.	.	.	.	770	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	H	K	T	F	C	I	P	H	G	G	G	G	P	G	M	G	P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	.	.	.	.	.	.	.	.	.	.	.	.	.	S	W	M	Y	I	R	M
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.
Template Sequence		S	F	Y	S	K	H	I	A	T	M	E	G	G	.	.	.	C	I	V	T	D	D	E	E	I	Y	H	I	L	L	C	I	R	A	H	G	W	T	R	N	L	P	K	K	N	K	V	T	G	V	K	S	D	D	Q	F	E	E	S	F	K	F	V	L	P	G	Y	N	V	R	P	L	E	M	S	G	A	I	G	I
Template Known Secondary structure				T	T	S	S	S		S	S	S			.	.	.					S												T	B	T	T	B	S	T	T	S		S	B		S	S	S	S	B			S						T	T		B		S				B				B
Template Predicted Secondary structure															.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.				.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		773	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.		.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850
Predicted Secondary structure																																				.																																													.
Query SS confidence																																				.																																													.
Query Sequence		M	G	A	E	G	L	K	K	A	S	Q	V	A	I	L	N	A	N	Y	I	A	S	R	L	Q	D	A	F	P	V	L	Y	T	G	.	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	D	Y	G	F	H	A	P	T	M	S	F	P	.
Query Conservation																																				.																																													.
Alig confidence																																				.															.	.	.																												.
Template Conservation																																																			.	.	.
Template Sequence		E	Q	L	K	K	L	P	R	F	I	S	V	R	R	K	N	A	E	Y	F	L	D	K	F	K	D	H	P	Y	L	D	V	Q	Q	E	T	G	E	S	S	W	F	G	F	S	F	I	I	K	.	.	.	K	D	S	G	V	I	R	K	Q	L	V	E	N	L	N	S	A	G	I	E	C	R	P	I	V	T	G	N
Template Known Secondary structure																										T	T		S	S								S	B												.	.	.	T	T	S														T	T	B			B		S	T	T	S
Template Predicted Secondary structure																																																			.	.	.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.				310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		851	.	.																										.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	M	V	E	P	T	E	S	E	S	K	V	E	L	D	R	F	I	D	A	M	L
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	L	K	N	T	D	V	L	K	Y	F	D	Y	T	V	H	N	N	V	D	N	A	E	Y	L	D	K	N	G	L	F	V	G	N	H	Q	I	E	L	F	D	E	I	D	Y	L	R	E	V	L	K
Template Known Secondary structure		G	G	G						T	T							S																			S	S													T
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions