Job Description P33195 Confidence 99.89% Date Thu Jan 5 11:51:15 GMT 2012 Rank 25 Aligned Residues 311 % Identity 15% Template c2qmaB_ PDB info PDB header:transferase Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus Resolution 1.81 Å

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		540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.			.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590													.	.	.	.	.	.	.	.	.	600	.	.	.	.	.
Predicted Secondary structure																										.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	Q	A	E	G	Y	Q	Q	M	I	A	Q	L	A	D	W	L	V	K	L	T	G	Y	D	.	.	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y	A	G	L	L	A	I	R	H	Y	H	E	S	R	.	.	.	.	.	.	.	.	.	.	.	.	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H
Query Conservation																										.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	Q	A	S	S	A	T	Y	V	E	Q	K	V	V	N	W	L	C	D	K	Y	D	L	S	E	K	A	D	G	I	F	T	S	G	G	T	Q	S	N	Q	X	G	L	X	L	A	R	D	W	I	A	D	K	L	S	G	H	S	I	Q	K	L	G	L	P	D	Y	A	D	K	L	R	I	V	C	S	K	K	S	H
Template Known Secondary structure		G	G																			T	T			T	T							S	S																														S		T	T	G	G	G							T	T	S
Template Predicted Secondary structure
Template SS confidence
		594	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.
		606	.	.	.	610	.	.	.	.	.	.	.				.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.				.	.	.	.	.	.	.	.	650	.	.	.	.	.	.		.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.																									.	.	.																.
Query SS confidence														.	.	.																									.	.	.																.
Query Sequence		G	T	N	P	A	S	A	H	M	A	G	M	.	.	.	Q	V	V	V	V	A	C	D	K	N	G	N	I	D	L	T	D	L	R	A	K	A	E	Q	.	.	.	A	G	D	N	L	S	C	I	M	V	T	Y	P	S	T	.	H	G	V	Y	E	E	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V
Query Conservation														.	.	.																									.	.	.																.
Alig confidence														.	.	.																									.	.	.																.							.
Template Conservation																																																																		.
Template Sequence		F	T	V	Q	K	S	A	S	W	X	G	L	G	E	K	A	V	X	T	V	D	A	N	A	D	G	T	X	D	I	T	K	L	D	E	V	I	A	Q	A	K	A	E	G	L	I	P	F	A	I	V	G	T	A	G	T	T	D	H	G	A	I	D	D	.	L	D	F	I	A	D	X	A	V	K	H	D	X	W	X
Template Known Secondary structure		T									T	T	S		G	G	G						B		T	T	S		B															T	T										B	S		T	T	T			B			.												T
Template Predicted Secondary structure																																																																		.
Template SS confidence
		674	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.		.	.	740	.	.	.	.	.	.	.	.	.	750	.	.
		679	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.					.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.
Predicted Secondary structure																					.	.	.	.
Query SS confidence																					.	.	.	.
Query Sequence		Y	L	D	G	A	N	M	N	A	Q	V	G	I	T	S	P	G	F	I	.	.	.	.	G	A	D	V	S	H	L	N	L	H	K	T	F	C	I	P	H	G	G	G	G	P	G	M	G	P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A
Query Conservation																					.	.	.	.
Alig confidence																					.	.	.	.																			.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	V	D	G	A	Y	G	G	A	L	I	L	S	S	H	K	S	R	L	K	G	V	E	R	A	H	S	I	S	V	D	F	H	K	L	F	Y	Q	T	I	S	.	.	.	.	.	C	G	A	L	L	V	N	D	K	S	N	F	K	F	L	L	K	R	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T	G	G	G	G	G	G	S	T	T	G	G	G	G	T	T	G	G	G		S						T	T	S	T	T				S	S	.	.	.	.	.							S		G	G	G	G	G	G	G					T	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		753	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.						.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.
		755	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E	G	L	K	K	A	S	Q	V	A	I	L	N	A	N	Y	I	A	S	R	L	Q	D	A	F	P	V	L	Y	T	G	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	.	.	L	D
Query Conservation																																																																														.	.
Alig confidence		.	.	.	.	.	.	.	.																																																	.	.	.	.																	.	.
Template Conservation		.	.	.	.	.	.	.	.																																																	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	A	L	K	V	F	X	T	X	Q	N	V	G	P	K	A	L	G	D	X	Y	D	H	L	L	A	Q	T	L	E	V	A	D	X	I	R	T	N	D	Q	F	E	L	L	A	E	P	S	L	.	.	.	.	S	T	V	L	F	R	A	T	H	E	T	A	D	L	D	E	L	N	K	A
Template Known Secondary structure		.	.	.	.	.	.	.	.											T																									T		T	T					S			S	S	.	.	.	.	S									S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																																	.	.	.	.
Template SS confidence
										838	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.					.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.
		833	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.		.	850	.	.	.	.	.	.	.	.	.	860		.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.
Predicted Secondary structure																		.													.
Query SS confidence																		.													.
Query Sequence		I	A	K	R	L	I	D	Y	G	F	H	A	P	T	M	S	.	F	P	V	A	G	T	L	M	V	E	P	T	.	E	S	E	S	K	V	E	L	D	R	F	I	D	A	M	L	A	I	R	A	E	I
Query Conservation																		.													.
Alig confidence																		.													.
Template Conservation
Template Sequence		L	R	L	E	A	L	T	R	G	I	A	V	L	G	E	T	I	V	D	G	K	T	A	L	K	F	T	I	L	N	P	C	L	T	T	S	D	F	E	S	L	L	S	K	I	N	X	L	A	V	E	L
Template Known Secondary structure										T	S		B							T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		906	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions