Job Description P33195 Confidence 99.91% Date Thu Jan 5 11:51:15 GMT 2012 Rank 20 Aligned Residues 328 % Identity 15% Template c2okkA_ PDB info PDB header:lyase Chain: A: PDB Molecule:glutamate decarboxylase 2; PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65) Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.					.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.					.	.	590	.	.	.			.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.																									.	.	.	.							.	.
Query SS confidence																										.	.	.	.																									.	.	.	.							.	.
Query Sequence		E	Q	A	E	G	Y	Q	Q	M	I	A	Q	L	A	D	W	L	V	K	L	T	G	Y	D	.	.	.	.	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y	A	G	L	L	A	I	R	H	Y	H	.	.	.	.	E	S	R	N	E	G	.	.	H	R	D	I	C	L	I	P	A	S	A	H	G	T	N	P
Query Conservation																										.	.	.	.																									.	.	.	.							.	.
Alig confidence																										.	.	.	.								.																	.	.	.	.							.	.
Template Conservation																																					.
Template Sequence		E	I	A	P	V	F	V	L	L	E	Y	V	T	L	K	K	M	R	E	I	I	G	W	P	G	G	S	G	D	G	I	F	S	P	G	.	G	A	I	S	N	M	Y	A	M	M	I	A	R	F	K	M	F	P	E	V	K	E	K	G	M	A	A	L	P	R	L	I	A	F	T	S	E	H	S	H	F	S	L	K
Template Known Secondary structure		T	T																				T		G	G	G		S						S	S	.																		T	T						G	G	G	S									T	T	S		T
Template Predicted Secondary structure																																					.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		610	.	.	.	.	.	.	.				.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640				.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.		.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.
Predicted Secondary structure										.	.	.																								.	.	.																		.
Query SS confidence										.	.	.																								.	.	.																		.
Query Sequence		A	S	A	H	M	A	G	M	.	.	.	Q	V	V	V	V	A	C	D	K	N	G	N	I	D	L	T	D	L	R	A	K	A	E	.	.	.	Q	A	G	D	N	L	S	C	I	M	V	T	Y	P	S	T	H	.	G	V	Y	E	E	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G
Query Conservation										.	.	.																								.	.	.																		.
Alig confidence										.	.	.																								.	.	.																		.						.
Template Conservation																																																														.
Template Sequence		K	G	A	A	A	L	G	I	G	T	D	S	V	I	L	I	K	C	D	E	R	G	K	M	I	P	S	D	L	E	R	R	I	L	E	A	K	Q	K	G	F	V	P	F	L	V	S	A	T	A	G	T	T	V	Y	G	A	F	D	P	.	L	L	A	V	A	D	I	C	K	K	Y	K	I	W	M	H	V	D	A
Template Known Secondary structure							T	T	S		G	G	G						B		T	T	S		B															T	T										B	S		T	T	T			B			.												T
Template Predicted Secondary structure																																																														.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		683	.	.	.	.	.	.	690	.	.	.	.	.	.	.						.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.
Query SS confidence																	.	.	.	.	.
Query Sequence		A	N	M	N	A	Q	V	G	I	T	S	P	G	F	I	.	.	.	.	.	G	A	D	V	S	H	L	N	L	H	K	T	F	C	I	P	H	G	G	G	G	P	G	M	G	P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F
Query Conservation																	.	.	.	.	.
Alig confidence																	.	.	.	.	.												.																																												.	.	.	.	.
Template Conservation																																	.																																												.	.	.	.	.
Template Sequence		A	W	G	G	G	L	L	M	S	R	K	H	K	W	K	L	S	G	V	E	R	A	N	S	V	T	W	N	P	H	M	.	M	G	V	P	L	Q	C	S	A	L	L	V	R	E	E	G	L	M	Q	N	C	N	Q	M	H	D	L	S	Y	D	T	G	D	K	A	L	Q	C	G	R	H	V	D	.	.	.	.	.
Template Known Secondary structure		T	T	G	G	G	G	G	G		T	T	T	G	G	G	G	T	T	G	G	G		S									.				S	S								S	S	T	T											G	G	G			G	G	G	S	S		S	S					.	.	.	.	.
Template Predicted Secondary structure																																	.																																												.	.	.	.	.
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.		.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
		758	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E	G	L	K	K	A	S	Q	V	A	I	L	N	A	N	Y	I	A	S	R	L	Q	D	A	F	P	V	L	Y	T	G	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																																																				.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	V	F	K	L	W	L	M	W	R	A	K	G	T	T	G	F	E	A	H	V	D	K	C	L	E	L	A	E	Y	L	Y	N	I	I	K	N	R	E	G	Y	E	M	V	F	D	G	K	P	Q	H	T	N	V	C	F	W	Y	I	P	P	S	L	R	T	L	E	E	R	M	S	R	L	S	K	V
Template Known Secondary structure		.	.	.	.	.																																				T	S	T	T				S	S	S	S			S	S	S									T	T	T	T	T									T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
		830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.				.	.	.	.	.	860		.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.
Predicted Secondary structure																											.	.	.							.
Query SS confidence																											.	.	.							.
Query Sequence		E	L	D	I	A	K	R	L	I	D	Y	G	F	H	A	P	T	M	S	F	P	V	A	G	T	.	.	.	L	M	V	E	P	T	.	E	S	E	S	K	V	E	L	D	R	F	I	D	A	M	L	A	I	R	A	E
Query Conservation																											.	.	.							.
Alig confidence																			.								.	.	.							.
Template Conservation																			.
Template Sequence		A	P	V	I	K	A	R	M	M	E	Y	G	T	T	M	V	S	.	Y	Q	P	L	G	D	K	V	N	F	F	R	M	V	I	S	N	P	A	A	T	H	Q	D	I	D	F	L	I	E	E	I	E	R	L	G	Q	D
Template Known Secondary structure													T	S					.					T	T												T	T
Template Predicted Secondary structure																			.
Template SS confidence
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.		.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions