Job Description P33195 Confidence 99.31% Date Thu Jan 5 11:51:15 GMT 2012 Rank 184 Aligned Residues 350 % Identity 14% Template c2o0rA_ PDB info PDB header:transferase Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase); PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis Resolution 2.00 Å

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		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.		.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		S	E	T	E	M	M	R	Y	M	H	S	L	E	R	K	D	L	A	L	N	Q	A	M	I	P	L	G	S	C	T	M	K	L	N	A	A	A	E	M	I	P	I	T	W	P	E	F	A	E	.	L	H	P	F	C	P	P	E	Q	A	E	G	Y	Q	Q	M	I	A	Q	L	A	D	W	L	V	K	L	T	G	Y
Query Conservation																																																			.
Alig confidence																		.	.	.	.	.																													.							.	.	.
Template Conservation																		.	.	.	.	.																																				.	.	.
Template Sequence		Y	A	T	T	V	F	A	E	M	S	A	L	A	T	R	I	.	.	.	.	.	G	A	V	N	L	G	Q	G	F	P	D	E	D	G	P	P	K	M	L	Q	A	A	Q	D	A	I	A	G	G	V	N	Q	Y	P	P	.	.	.	G	P	G	S	A	P	L	R	R	A	I	A	A	Q	R	R	R	H	F	G	V
Template Known Secondary structure		G	S	S												T	T	.	.	.	.	.	T				S	S		S	S		S	S																T	T			S				.	.	.	T	T
Template Predicted Secondary structure																		.	.	.	.	.																																				.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.						.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		563	.	.	.					.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.				630	.	.	.	.	.
Predicted Secondary structure						.	.	.	.																																																																.	.	.
Query SS confidence						.	.	.	.																																																																.	.	.
Query Sequence		D	A	V	C	.	.	.	.	M	Q	P	N	S	G	A	Q	G	E	Y	A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H	G	T	N	P	A	S	A	H	M	A	G	M	Q	V	V	V	V	A	C	D	K	N	G	N	.	.	.	I	D	L	T	D	L
Query Conservation						.	.	.	.																																																																.	.	.
Alig confidence						.	.	.	.																			.	.	.	.	.	.	.	.																																						.	.	.
Template Conservation																												.	.	.	.	.	.	.	.
Template Sequence		D	Y	D	P	E	T	E	V	L	V	T	V	G	A	T	E	A	I	A	A	A	V	L	G	L	V	.	.	.	.	.	.	.	.	E	P	G	S	E	V	L	L	I	E	P	F	Y	D	S	Y	S	P	V	V	A	M	A	G	A	H	R	V	T	V	P	L	V	P	D	G	R	G	F	A	L	D	A	D	A	L
Template Known Secondary structure					T	T	T	S																				.	.	.	.	.	.	.	.		T	T								S			T	T								T	T												T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.									.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		636	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.				.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.							.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.																												.	.	.	.	.	.
Query SS confidence																									.	.	.																												.	.	.	.	.	.
Query Sequence		R	A	K	A	E	Q	A	G	D	N	L	S	C	I	M	V	T	Y	P	S	T	H	G	.	.	.	V	Y	E	E	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	N	M	.	.	.	.	.	.	N	A	Q	V	G	I	T	S	P	G	F	I	G	A	D	V	S	H	L	N	L
Query Conservation																									.	.	.																												.	.	.	.	.	.
Alig confidence							.	.	.																.	.	.																												.	.	.	.	.	.
Template Conservation							.	.	.
Template Sequence		R	R	A	V	T	.	.	.	P	R	T	R	A	L	I	I	N	S	P	H	N	P	T	G	A	V	L	S	A	T	E	L	A	A	I	A	E	I	A	V	A	A	N	L	V	V	I	T	D	E	V	Y	E	H	L	V	F	D	H	A	R	H	L	P	L	A	G	F	D	G	M	A	E	R	T	I	T	I	S	S
Template Known Secondary structure							.	.	.	T	T								S	S		T	T	T																			T	T								T	T	T	T		B		T	T						G	G	G	S	T	T	T	G	G	G
Template Predicted Secondary structure							.	.	.
Template SS confidence
		153	.	.	.	.				.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		707	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	K	T	F	C	I	P	H	G	G	G	G	P	G	M	G	P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E	G	L	K	K	A	S	Q	V	A	I
Query Conservation
Alig confidence									.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	M	F	N	C	T	.	.	.	.	G	W	K	I	G	W	A	C	G	P	A	E	L	I	A	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	A	K	Q	Y	L	S	Y	V	G	G	A	P	F	Q	P	A	V	A	L	A	L	D	T	E	D	A	W	V	A	A	L	R	N	S	L	R
Template Known Secondary structure						S		T	.	.	.	.	T	T																.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	S				T	T
Template Predicted Secondary structure									.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.					.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.															.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		787	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.		840	.	.	.	.		.	.	.	.	.	850	.	.	.						.	.	.	.	.	.
Predicted Secondary structure																																																							.						.										.	.	.	.	.
Query SS confidence																																																							.						.										.	.	.	.	.
Query Sequence		L	N	A	N	Y	I	A	S	R	L	Q	D	A	F	P	V	L	Y	T	G	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	D	.	Y	G	F	H	A	.	P	T	M	S	F	P	V	A	G	.	.	.	.	.	T	L	M	V	E	P
Query Conservation																																																							.						.										.	.	.	.	.
Alig confidence																												.	.	.	.	.	.																						.						.										.	.	.	.	.
Template Conservation																												.	.	.	.	.	.
Template Sequence		A	R	R	D	R	L	A	A	G	L	T	E	I	G	F	A	V	H	D	S	Y	G	T	Y	F	L	.	.	.	.	.	.	C	A	D	P	R	P	L	G	Y	D	D	S	T	E	F	C	A	A	L	P	E	K	V	G	V	A	A	I	P	M	S	A	F	C	D	P	A	D	V	W	N	H	L	V	R	F	T	F
Template Known Secondary structure															T								B	S	S			.	.	.	.	.	.					G	G	G	T																S						G	G	G	G	S						G	G	G
Template Predicted Secondary structure																												.	.	.	.	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.							.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	S	E	S	K	V	E	L	D	R	F	I	D	A	M	L	A	I
Query Conservation
Alig confidence			.	.
Template Conservation			.	.
Template Sequence		C	.	.	K	R	D	D	T	L	D	E	A	I	R	R	L	S	V	L
Template Known Secondary structure			.	.	S													G	G	G
Template Predicted Secondary structure			.	.
Template SS confidence
		375			.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions