Job Description P33195 Confidence 99.53% Date Thu Jan 5 11:51:15 GMT 2012 Rank 121 Aligned Residues 352 % Identity 16% Template c2douA_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable n-succinyldiaminopimelate aminotransferase; PDBTitle: probable n-succinyldiaminopimelate aminotransferase (ttha0342) from2 thermus thermophilus hb8 Resolution 2.30 Å

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		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.			.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		T	E	M	M	R	Y	M	H	S	L	E	R	K	D	L	A	L	N	Q	A	M	I	P	L	G	S	C	T	M	K	L	.	.	N	A	A	A	E	M	I	P	I	T	W	P	E	F	A	E	L	H	P	F	C	P	P	E	Q	A	E	G	Y	Q	Q	M	I	A	Q	L	A	D	W	L	V	K	L	T	G	Y	D
Query Conservation																																	.	.
Alig confidence																																	.	.																							.	.	.
Template Conservation																																																									.	.	.
Template Sequence		P	S	V	F	L	V	V	D	E	A	K	R	K	A	R	E	R	G	V	G	L	I	D	L	S	I	G	S	T	D	L	P	P	P	E	A	P	L	K	A	L	A	E	A	L	N	D	P	T	T	Y	G	Y	C	L	.	.	.	K	S	C	T	L	P	F	L	E	E	A	A	R	W	Y	E	G	R	Y	G	V	G
Template Known Secondary structure		T																T	T							S	S																			T	T		G	G	G	S	S				.	.	.																				S
Template Predicted Secondary structure																																																									.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.				.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
						564	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y	A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H	G	T	N	P	A	S	A	H	M	A	G	M	Q	V	V	V	V	A	C	D	K	N	G	N	I	D	L	T	D	L	R	A	K	A
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																						.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.
Template Sequence		L	D	P	R	R	E	A	L	A	L	I	G	S	Q	E	G	L	A	H	L	L	L	A	L	T	.	.	.	.	.	.	.	.	E	P	E	D	L	L	L	L	P	E	V	A	Y	P	S	Y	F	G	A	A	R	V	A	S	L	R	T	F	L	I	P	L	R	E	D	G	L	A	D	L	K	A	V	P	E	G	V
Template Known Secondary structure				T	T	T	S					S	S														.	.	.	.	.	.	.	.		T	T							S	S												T	T								B		T	T	S	S	B		G	G	G	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.									.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.							.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.
Query Sequence		E	Q	A	G	D	N	L	S	C	I	M	V	T	Y	P	S	T	H	G	V	Y	E	E	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	.	.	.	.	.	.	N	M	N	A	Q	V	G	I	T	S	P	G	F	I	G	A	D	V	S	H	L	N	L	H	K	T	F	C	I	P
Query Conservation																																														.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.
Template Conservation
Template Sequence		W	R	E	A	K	V	L	L	L	N	Y	P	N	N	P	T	G	A	V	A	D	W	G	Y	F	E	E	A	L	G	L	A	R	K	H	G	L	W	L	I	H	D	N	P	Y	V	D	Q	V	Y	E	G	E	A	P	S	P	L	A	L	P	G	A	K	E	R	V	V	E	L	F	S	L	S	K	S	Y	N	L	A
Template Known Secondary structure												S	S		T	T	T																			T	T								T	T	G	G	G	B	S	S	S					G	G	G	S	T	T	G	G	G	T												T		G
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		714	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	G	G	G	P	G	M	G	P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E	G	L	K	K	A	S	Q	V	A	I	L	N	A	N	Y	I	A
Query Conservation
Alig confidence		.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	G	F	R	L	G	F	A	L	G	S	E	E	A	L	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	R	V	K	G	V	I	D	F	N	Q	Y	A	G	V	L	R	M	G	V	E	A	L	K	T	P	K	E	V	V	R	G	Y	A	R	V	Y	R	E	R	A	L	G	M	A
Template Known Secondary structure		.	.	.	.	G	G															.	.	.	.	.	.	.	.	.	.	.	.	.	.												S													T	S
Template Predicted Secondary structure		.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.															.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		794	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.		.	.	.	.	.	850			.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870
Predicted Secondary structure																																																					.							.	.
Query SS confidence																																																					.							.	.
Query Sequence		S	R	L	Q	D	A	F	P	V	L	Y	T	G	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	D	Y	G	F	H	A	.	P	T	M	S	F	P	.	.	V	A	G	T	L	M	V	E	P	T	E	S	E	S	K	V	E	L	D	R
Query Conservation																																																					.							.	.
Alig confidence																								.	.	.	.	.	.	.	.	.																					.							.	.											.	.
Template Conservation																								.	.	.	.	.	.	.	.	.																																								.	.
Template Sequence		E	A	L	K	G	V	L	S	L	L	P	P	R	A	T	M	Y	L	W	G	R	L	.	.	.	.	.	.	.	.	.	P	E	G	V	D	D	L	E	F	G	L	R	L	V	E	R	G	V	A	L	A	P	G	R	G	F	G	P	G	G	K	G	F	V	R	I	A	L	V	.	.	R	P	L	E	E	L	L	E
Template Known Secondary structure					T	T	T	S							B	S	S							.	.	.	.	.	.	.	.	.		T	T													T	T						G	G	G	G		G	G	G	T	T								.	.	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.																																								.	.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.										320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.			.	360	.	.	.	.	.	.
		871	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	D	A	M	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	K	R	I	R	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		367	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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