Job Description P33195 Confidence 99.18% Date Thu Jan 5 11:51:15 GMT 2012 Rank 204 Aligned Residues 344 % Identity 15% Template c1d2fB_ PDB info PDB header:transferase Chain: B: PDB Molecule:maly protein; PDBTitle: x-ray structure of maly from escherichia coli: a pyridoxal-5'-2 phosphate-dependent enzyme acting as a modulator in mal gene3 expression Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.		.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.					.	.	.	.	.	.	570	.	.	.	.	.	.	.
Predicted Secondary structure																															.																																	.	.	.	.
Query SS confidence																															.																																	.	.	.	.
Query Sequence		N	Q	A	M	I	P	L	G	S	C	T	M	K	L	N	A	A	A	E	M	I	P	I	T	W	P	E	F	A	.	E	L	H	P	F	C	P	P	E	Q	A	E	G	Y	Q	Q	M	I	A	Q	L	A	D	W	L	V	K	L	T	G	Y	D	.	.	.	.	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y
Query Conservation																															.																																	.	.	.	.
Alig confidence																															.								.	.	.				.																			.	.	.	.
Template Conservation																																							.	.	.				.
Template Sequence		K	V	V	L	L	P	F	T	I	S	D	M	D	F	A	T	A	P	C	I	I	E	A	L	N	Q	R	L	M	H	G	V	F	G	Y	S	R	.	.	.	W	K	N	.	D	E	F	L	A	A	I	A	H	W	F	S	T	Q	H	Y	T	A	I	D	S	Q	T	V	V	Y	G	P	S	V	I	Y	M	V	S	E
Template Known Secondary structure		S								S	S	S		S	S															T	T								.	.	.	S			.															S						G	G	G					S
Template Predicted Secondary structure																																							.	.	.				.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.				.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.
Predicted Secondary structure																																																					.	.	.
Query SS confidence																																																					.	.	.
Query Sequence		A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H	G	T	N	P	A	S	A	H	M	A	G	M	Q	V	V	V	V	A	C	D	K	N	G	.	.	.	N	I	D	L	T	D	L	R	A	K	A	E	Q	A	G	D	N	L	S	C	I	M	V	T	Y	P
Query Conservation																																																					.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.																																						.	.	.														.	.
Template Conservation							.	.	.	.	.	.	.	.	.																																																						.	.
Template Sequence		L	I	R	Q	W	.	.	.	.	.	.	.	.	.	S	E	T	G	E	G	V	V	I	H	T	P	A	Y	D	A	F	Y	K	A	I	E	G	N	Q	R	T	V	M	P	V	A	L	E	K	Q	A	D	G	W	F	C	D	M	G	K	L	E	A	V	L	A	K	.	.	P	E	C	K	I	M	L	L	C	S	P
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	S		T	T								S			T									T	T												T	T														T	S	.	.	T	T								S	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.																																																						.	.
Template SS confidence
		103	.	.	.	.										.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.	.	170	.
		655	.	.	.	.	660				.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.						.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.
Predicted Secondary structure								.	.	.																								.	.	.	.	.
Query SS confidence								.	.	.																								.	.	.	.	.
Query Sequence		S	T	H	G	V	Y	.	.	.	E	E	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	.	.	.	.	.	N	M	N	A	Q	V	G	I	T	S	P	G	F	I	G	A	D	V	S	H	L	N	L	H	K	T	F	C	I	P	H	G	G	G	G	P	G	M	G	P	I	G	V
Query Conservation								.	.	.																								.	.	.	.	.
Alig confidence								.	.	.																								.	.	.	.	.																															.	.	.	.
Template Conservation																																																																					.	.	.	.
Template Sequence		Q	N	P	T	G	K	V	W	T	C	D	E	L	E	I	M	A	D	L	C	E	R	H	G	V	R	V	I	S	D	E	I	H	M	D	M	V	W	G	E	Q	P	H	I	P	W	S	N	V	A	R	G	D	W	A	L	L	T	S	G	S	K	S	F	N	I	P	.	.	.	.	A	L	T	G	A	Y	G	I	I
Template Known Secondary structure			T	T	T																			T	T								T	T	T	T		B		S	S	S					G	G	G	T			S	S							S					T		G	.	.	.	.	G	G
Template Predicted Secondary structure																																																																					.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.					.	240	.	.	.	.	.	.	.
		727	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E	G	L	K	K	A	S	Q	V	A	I	L	N	A	N	Y	I	A	S	R	L	Q	D	A	F	P	V	L	Y	T	G
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	N	S	S	S	R	D	A	Y	L	.	.	.	.	.	.	.	.	.	.	.	S	A	L	K	G	R	D	G	L	S	S	P	S	V	L	A	L	T	A	H	I	A	A	Y	Q	Q	G	A	P	W	L	D	A	L	R	I	Y	L	K	D	N	L	T	Y	I	A	D	K	M	N	A	A	F	P	E	L	N	W	Q
Template Known Secondary structure			S									.	.	.	.	.	.	.	.	.	.	.					T	T	S				S																																											T	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.												.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		807	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840		.	.	.	.		.	.	.	.	.	850	.			.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.
Predicted Secondary structure																																				.					.								.	.
Query SS confidence																																				.					.								.	.
Query Sequence		R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	D	Y	.	G	F	H	A	.	P	T	M	S	F	P	V	.	.	A	G	T	L	M	V	E	P	T	E	S	E	S	K	V	E	L	D	R	F	I	D	A	M	L	A	I	R	A	E	I
Query Conservation																																				.					.								.	.
Alig confidence											.					.	.	.	.																	.					.								.	.										.	.
Template Conservation											.					.	.	.	.																																									.	.
Template Sequence		I	P	Q	S	T	Y	L	A	W	.	L	D	L	R	.	.	.	.	P	L	N	I	D	D	N	A	L	Q	K	A	L	I	E	Q	E	K	V	A	I	M	P	G	Y	T	Y	G	E	E	G	R	G	F	V	R	L	N	A	G	.	.	C	P	R	S	K	L	E	K	G	V	A	G	L	I	N	A	I	R	A	V
Template Known Secondary structure				S	B		S				.				G	.	.	.	.	G	G														T	T							G	G	G	G		G	G	G	T	T								.	.	S
Template Predicted Secondary structure											.					.	.	.	.																																									.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.		.	.	.	.					330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.			370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		883
Predicted Secondary structure
Query SS confidence
Query Sequence		D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		390

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions