Return to main results Retrieve Phyre Job Id

Job DescriptionP00550
Confidence97.39%DateThu Jan 5 10:56:43 GMT 2012
Rank17Aligned Residues91
% Identity12%Templated1iiba_
SCOP infoPhosphotyrosine protein phosphatases I-like PTS system IIB component-like PTS system, Lactose/Cellobiose specific IIB subunit
Resolution1.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   378.380.........390.........400.........410.........420. ........430.... .....440.........450.
Predicted Secondary structure 












...







...









Query SS confidence 











































. . .












. . .
















Query Sequence  RKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNLP. . . PDVDLVITHRDLT. . . ERAMRQVPQAQHISLTN
Query Conservation 






 





 


  

  
       
           ... 
 






 
 ...          


 

 
Alig confidence 















.












.












...












...
















Template Conservation 




 
  
 


 
.  

   
     .   
 
             




 


 
    
       

  
  
Template Sequence  KHIYLFSSAGMSTSLL. VSKMRAQAEKYEV. PVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPNKPVEVIDS
Template Known Secondary structure  S
.TT
.
GGGTT
S
GGGGGG
TTS


Template Predicted Secondary structure 





.


.










Template SS confidence 















































































   4.....10......... 20.........30.. .......40.........50.........60.........70.........80.
 
   452.......460.........470
Predicted Secondary structure  ....



Query SS confidence  . . . .


















Query Sequence  . . . . FLDSGLYTSLTERLVAAQR
Query Conservation  .... 
   
   
   
     
Alig confidence  ....


















Template Conservation    

 


  

  
   
    
Template Sequence  LLYGKVDGLGVLKAAVAAIKKAA
Template Known Secondary structure  TT
Template Predicted Secondary structure 


Template SS confidence 






















   82.......90.........100....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions