Job Description P00550 Confidence 100.00% Date Thu Jan 5 10:56:43 GMT 2012 Rank 1 Aligned Residues 353 % Identity 12% Template c3qnqD_ PDB info PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Resolution 3.29 Å

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		1	.	.	.	.	.	.	.	.	10						.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.												.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	S	D	I	K	I	K	V	Q	.	.	.	.	.	S	F	G	R	F	L	S	N	M	V	M	P	N	I	G	A	F	I	A	W	G	I	I	T	A	L	.	.	.	.	.	.	.	.	.	.	.	F	I	P	T	G	W	L	P	N	E	T	L	A	K	L	V	G	P	M	I	T	Y	L	L	P	L	L	I
Query Conservation												.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	K	Y	V	M	P	V	A	G	K	V	A	E	Q	R	H	L	L	A	I	R	D	G	L	V	L	T	M	P	F	L	I	I	G	S	I	F	L	I	I	S	T	L	P	I	P	G	Y	S	E	F	M	A	S	L	F	G	K	N	W	N	V	A	L	G	Y	P	V	S	A	T	F	N	I	M	A	L	I	A
Template Known Secondary structure		S	T	T	T	S																					G	G	G	T	T													T				T	T	T	T	T						T		S			T	T	G	G	G								T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
						65	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.																								90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure		.	.	.	.													.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query SS confidence		.	.	.	.													.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query Sequence		.	.	.	.	G	Y	T	G	G	K	L	V	G	G	E	R	.	.	G	G	V	V	G	A	I	T	T	M	G	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	A	D	M	P	M	F	L	G	S	M	I	A	G	P	L	G	G	W	C	I	K	H	F	.
Query Conservation		.	.	.	.													.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Alig confidence		.	.	.	.													.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation
Template Sequence		V	F	G	I	A	Y	R	L	G	E	Y	Y	K	V	D	A	L	A	S	G	A	L	S	L	V	T	F	L	L	A	T	P	F	Q	V	A	Y	I	M	P	G	T	K	E	S	I	L	V	D	G	V	I	P	A	A	L	M	G	S	Q	G	L	F	V	A	M	I	I	A	I	I	S	T	E	I	Y	R	F	L	V
Template Known Secondary structure														T	S																	S		S							T	T	T	S							S				T	T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.						.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.																												.	.	.	.	.
Query SS confidence																																.																												.	.	.	.	.
Query Sequence		D	R	W	V	D	G	K	I	K	S	G	F	E	M	L	V	N	N	F	S	A	G	I	I	G	M	I	L	A	I	.	L	A	F	L	G	I	G	P	I	V	E	A	L	S	K	M	L	A	A	G	V	N	F	M	V	V	H	.	.	.	.	.	D	M	L	P	L	A	S	I	F	V	E	P	A	K	I	L	F
Query Conservation																																.																												.	.	.	.	.
Alig confidence																																.																												.	.	.	.	.
Template Conservation
Template Sequence		Q	K	K	M	I	I	K	M	P	E	T	V	P	P	A	V	T	R	S	F	A	A	L	I	P	G	F	I	V	V	T	V	V	W	I	I	R	L	I	F	E	H	T	T	F	G	S	I	H	N	V	V	G	K	L	L	Q	E	P	L	S	I	L	G	A	S	L	W	G	A	V	I	A	V	I	L	V	H	V	L
Template Known Secondary structure			T	T		S					T	T	S																														T	S	S	S		S									T	T	T								S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		189	190	.	.	.	.	.	.	.	.						.	200	.	.	.	.	.	.	.	.																	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	N	A	I	N	H	G	I	F	.	.	.	.	.	S	P	L	G	I	Q	Q	S	H	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	K	S	I	F	F	L	I	E	A	N	P	G	P	G	M	G	V	L	L	A	Y	M	F	F	G	R	G	S	A	K	Q	S	A	G	G	A	A
Query Conservation												.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	A	C	G	I	H	G	A	T	I	V	G	G	V	M	S	P	I	W	L	S	L	M	D	Q	N	R	I	A	F	Q	A	G	Q	D	V	P	N	T	I	T	A	Q	F	F	D	L	W	I	Y	M	G	G	S	G	A	T	L	A	L	V	V	G	M	L	L	F	A	R	S	Q	Q	L	K	S	L	G	R	L	S
Template Known Secondary structure				T	T	S						T																					T	T						S										T	S		S	S	S	S	S	T													S										T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300								.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.																																						.	.	.	.	.	.	.
Query SS confidence																		.																																						.	.	.	.	.	.	.
Query Sequence		I	I	H	F	L	G	G	I	H	E	I	Y	F	P	Y	V	.	L	M	N	P	R	L	I	L	A	V	I	L	G	G	M	T	G	V	F	T	L	T	I	L	G	G	G	L	V	S	P	A	S	P	G	S	I	.	.	.	.	.	.	.	L	A	V	L	A	M	T	P	K	G	A	Y	F	A	N	I	A	G	V
Query Conservation																		.																																						.	.	.	.	.	.	.
Alig confidence																		.																																						.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	A	P	G	I	F	N	I	N	E	M	V	T	F	G	M	P	I	V	M	N	P	L	L	L	I	P	F	I	V	V	P	V	V	L	T	I	V	S	Y	F	A	M	E	W	G	L	V	A	R	P	S	G	A	A	V	T	W	T	T	P	I	L	F	S	G	Y	L	G	S	G	G	K	I	S	G	V	I	L	Q
Template Known Secondary structure		S					T	T									T	T		T	T		T	T	T																					T	T	S	S					S					T	T	S									T	T	T	T		T	T	T
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	A	A	M	A	V	S	F	V	V	S	A	I	L	L	K	T	S	K	V	K	E	E	D	D	I	E	A	A	T	R	R	M	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	N	F	A	L	A	F	V	I	Y	L	P	F	L	K	I	W	D	K	Q	K	I	A	E	E	K	G	E	A	A	A	E	N
Template Known Secondary structure																												T	T
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.