Job Description P75906 Confidence 70.50% Date Thu Jan 5 12:15:53 GMT 2012 Rank 228 Aligned Residues 120 % Identity 15% Template d1r46a2 SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Resolution 3.25

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		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.		.	.	.	.	.	.	.	350	.	.	.	.	.						.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure																	.														.	.	.	.	.
Query SS confidence																	.														.	.	.	.	.
Query Sequence		N	L	Q	Q	M	D	R	N	I	D	V	L	I	Q	R	.	V	K	D	M	Q	I	S	T	V	Y	L	Q	A	.	.	.	.	.	F	A	D	P	D	G	D	G	L	V	K	E	V	W	F	P	N	R	L	L	P	M	K	A	D	I	F	S	R	V	A	W	Q	L	R	T	R	S	G	V	N	I	Y	A	W	M
Query Conservation																	.														.	.	.	.	.
Alig confidence																	.														.	.	.	.	.																		.	.	.	.	.	.	.	.										.
Template Conservation																																																					.	.	.	.	.	.	.	.										.
Template Sequence		S	E	K	L	F	M	E	M	A	E	L	M	V	S	E	G	W	K	D	A	G	Y	E	Y	L	C	I	D	D	C	W	M	A	P	Q	R	D	S	E	G	R	L	Q	A	D	P	Q	R	F	P	H	.	.	.	.	.	.	.	.	G	I	R	Q	L	A	N	Y	V	.	H	S	K	G	L	K	L	G	I	Y	A
Template Known Secondary structure		S														T	T					T								S	S		B		S	S			T	T	S				B		T	T	T		T	T	.	.	.	.	.	.	.	.										.			T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.										.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.									.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	L	S	W	D	L	D	P	T	L	T	R	V	K	Y	L	P	T	G	E	K	K	A	Q	I	H	P	E	Q	Y	H	R	L	S	P	F	D	D	R	V	R	A	Q	V	G	M	L	Y	E	D	L	A	G	H	A	A	F	D	G	I	L	F	H	D	D	A	L	L	S	D	Y	E	D	A	S	A	P	A	I
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.									.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.									.	.
Template Sequence		D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	K	T	C	A	G	F	P	G	S	F	G	Y	Y	D	I	D	A	Q	T	F	A	D	.	W	G	V	D	L	L	K	F	.	.	D	G	C	Y	C	D	S	L	E	N	L	A	D	G	Y
Template Known Secondary structure			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	B		T	T	S	S	B			T	T	T											.		T							.	.				S		S	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.									.	.
Template SS confidence
		136	.																													.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		482	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	Y	Q	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	H	M	S	L	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions