Job Description P75906 Confidence 97.37% Date Thu Jan 5 12:15:53 GMT 2012 Rank 115 Aligned Residues 125 % Identity 12% Template d1pama4 SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Resolution 1.80

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		334	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.		.	360	.	.													.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.																		.					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.																		.					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	N	I	D	V	L	I	Q	.	.	R	V	K	D	M	Q	I	S	T	V	Y	L	Q	A	F	A	D	.	P	D	G	D	.	.	.	.	.	.	.	.	.	.	.	.	G	L	V	K	E	V	W	F	P	N	R	L	L	P	M	K	A	D	I	F	S	R	V	A	W	Q	L	R	T	R	S	G	V	N	I	Y
Query Conservation										.	.																		.					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.																		.					.	.	.	.	.	.	.	.	.	.	.	.																												.								.
Template Conservation																																																																									.								.
Template Sequence		Q	G	I	I	N	K	I	N	D	G	Y	L	T	G	M	G	I	T	A	I	W	I	S	Q	P	V	E	N	I	Y	S	V	I	N	Y	S	G	V	N	N	T	A	Y	H	G	Y	W	A	R	D	F	K	K	T	N	P	A	Y	G	T	M	Q	D	F	K	N	L	I	D	T	A	.	H	A	H	N	I	K	V	.
Template Known Secondary structure										T	T	T	T	G	G	G	T																				T	T						T	T	S		S									T	T	T														.			T	T				.
Template Predicted Secondary structure																																																																									.								.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.																																				.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	W	M	P	V	L	S	W	D	L	D	P	T	L	T	R	V	K	Y	L	P	T	G	E	K	K	A	Q	I	H	P	E	Q	Y	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	S	P	F	D	D	R	V	R
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	I	I	D	F	A	P	N	H	T	S	P	A	S	S	D	D	P	S	F	A	E	N	G	R	L	Y	D	N	G	N	L	L	G	G	Y	T	N	D	T	Q	N	L	F	H	H	Y	G	G	T	D	F	S	T	I	E	N	G	I	Y	K	N	L	Y	D	L	A	D	L	N	H	N	N	S	S	V	D
Template Known Secondary structure		.	.	.	.						T	T							S	S		T	T	S	T	T	T	T					T	T						S	T	T		T	T			B			S		B				S	S							S	B	S	T	T				B		T	T	S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	V	G	M	L	Y	E	D	L	A	G	H	A	A	F	D	G	I	L	F	H
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		V	Y	L	K	D	A	I	K	M	W	L	.	D	L	G	V	D	G	I	R	V	D
Template Known Secondary structure													.		T	T							T
Template Predicted Secondary structure													.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions