Job Description P75906 Confidence 62.63% Date Thu Jan 5 12:15:53 GMT 2012 Rank 248 Aligned Residues 210 % Identity 15% Template c3d5hA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:haementhin; PDBTitle: crystal structure of haementhin from haemanthus multiflorus2 at 2.0a resolution: formation of a novel loop on a tim3 barrel fold and its functional significance Resolution 2.00 Å

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		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	Q	R	V	K	D	M	Q	I	S	T	V	Y	L	Q	A	F	A	D	P	D	G	D	G	L	V	K	E	V	W	F	P	N	R	L	L	P	M	K	A	D	I	F	S	R	V	A	W	Q	L	R	T	R	S	G	V	N	I	Y	A	W	M	P	V	L	S	W	D	L	D	P	T	L	T	R	V	K	Y	L
Query Conservation
Alig confidence																	.											.	.	.	.																						.								.	.	.	.	.											.	.	.	.	.	.
Template Conservation																	.											.	.	.	.																						.								.	.	.	.	.											.	.	.	.	.	.
Template Sequence		L	E	A	T	C	D	T	G	N	Y	A	Y	V	I	I	.	G	F	L	N	T	F	G	G	G	Q	.	.	.	.	T	P	A	L	D	I	S	G	H	S	P	S	G	L	E	P	Q	I	K	H	C	.	Q	S	K	N	V	K	V	.	.	.	.	.	L	L	S	I	G	G	P	K	G	P	.	.	.	.	.	.
Template Known Secondary structure								T	S			S					.								T	T		.	.	.	.						S	T	T			T	G	G	G								.			T	T				.	.	.	.	.							S	S		S	.	.	.	.	.	.
Template Predicted Secondary structure																	.											.	.	.	.																						.								.	.	.	.	.											.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.					.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70						.	.	.	.	.	.	.	.	.	80
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.													.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	T	G	E	K	K	A	Q	I	H	P	E	Q	Y	H	R	L	S	P	F	D	D	R	V	R	A	Q	V	G	M	L	Y	E	D	L	A	G	.	.	.	.	.	.	.	.	.	.	.	.	H	A	A	F	D	G	I	L	F	H	D	D	A	L	L	S	D	Y	E	D	A	S	A	P	A	I	T	A	Y	Q	Q
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.										.	.											.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.											.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	L	D	S	R	S	D	A	N	D	L	A	V	Y	L	F	N	N	F	L	L	P	P	G	H	S	E	N	R	P	F	G	N	A	V	L	D	G	I	D	F	.	.	H	I	E	H	G	G	P	S	Q	Y	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B				S																T	S				S	S	S			T	T	T	T				S					.	.				S	S		S	T	T		.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.											.	.	.	.	.	.	.	.	.	.
Template SS confidence
																		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	F	S	G	S	L	S	E	I	R	Q	N	P	E	Q	F	K	Q	W	A	R	F	K	S	R	A	L	T	D	F	T	L	E	L	S	A	R	V	K	A	I	R	G	P	H	I	K	T	A	R	N	I	F	A	L	P	V	I	Q	P	E	S	E	A	W	F	A	Q	N	Y	A	D	F	L	K	S	Y	D	W
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																									.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																									.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	L	A	N	I	L	S	S	F	R	L	A	.	G	T	E	F	A	L	T	A	A	P	Q	C	V	Y	P	D	P	N	L	G	T	V	I	N	.	.	.	.	.	.	.	.	S	A	T	F	D	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T	.	T										B	S	S	S	S		T	T	T					T	.	.	.	.	.	.	.	.	T	T			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																									.	.	.	.	.	.	.	.
Template SS confidence
																														133	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.									170	.	.	.	.	.
		567	.	.	570	.	.		.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		T	A	I	M	A	M	.	P	Y	L	E	G	V	A	E	K	S	A	D	Q	W	L	I	Q	L	T	N	Q	I	K	N	I	P	Q	A	K	D	K	S	I	L	E	L	Q	A	Q	N	W	Q	K	N	G	Q	H	Q	A	I	S	S	Q	Q	L	A	H	W	M	S	L	L
Query Conservation								.
Alig confidence								.																												.	.																	.	.
Template Conservation																																				.	.																	.	.
Template Sequence		I	W	V	Q	F	Y	N	N	P	Q	C	S	Y	S	S	G	N	A	E	A	L	M	N	A	W	R	E	W	S	M	K	A	R	T	.	.	K	K	V	F	L	G	F	P	A	H	P	D	A	A	G	S	.	.	G	Y	M	P	P	E	K	V	K	F	H	V	F	P	A
Template Known Secondary structure								S		T	T	T	S		B	T	T	B	T																S	.	.	S								S	S	T	T	S	S	S	S	.	.												T
Template Predicted Secondary structure																																				.	.																	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.			.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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