Job Description P75906 Confidence 96.82% Date Thu Jan 5 12:15:53 GMT 2012 Rank 136 Aligned Residues 124 % Identity 13% Template c3blpX_ PDB info PDB header:hydrolase Chain: X: PDB Molecule:alpha-amylase 1; PDBTitle: role of aromatic residues in human salivary alpha-amylase Resolution 1.60 Å

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		334	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.					.	370	.	.	.	.	.	.	.	.	.	380	.	.	.						.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure					.																																	.	.	.	.																.	.	.	.	.
Query SS confidence					.																																	.	.	.	.																.	.	.	.	.
Query Sequence		R	N	I	.	D	V	L	I	Q	R	V	K	D	M	Q	I	S	T	V	Y	L	Q	A	F	A	D	P	D	G	D	G	L	V	K	E	V	.	.	.	.	W	F	P	N	R	L	L	P	M	K	A	D	I	F	S	.	.	.	.	.	R	V	A	W	Q	L	R	T	R	S	G	V	N	I	Y	A	W	M	P	V
Query Conservation					.																																	.	.	.	.																.	.	.	.	.
Alig confidence					.																																	.	.	.	.							.	.								.	.	.	.	.															.	.	.	.	.
Template Conservation																																																.	.																											.	.	.	.	.
Template Sequence		V	D	I	A	L	E	C	E	R	Y	L	A	P	K	G	F	G	G	V	Q	V	S	P	P	N	E	N	V	A	I	H	N	P	F	R	P	W	W	E	R	Y	Q	P	V	S	Y	.	.	K	L	C	T	R	S	G	N	E	D	E	F	R	N	M	V	T	R	C	N	N	V	G	V	R	I	.	.	.	.	.	Y
Template Known Secondary structure											T	T	T	T	T	T										S		B	B			T	T	T	T	S		G	G	G	G	G	S	B	S		S	.	.		S		B	T	T	B															T	T				.	.	.	.	.
Template Predicted Secondary structure																																																.	.																											.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.						.
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.																																											.	.	.	.	.	440	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	W	D	L	D	P	T	L	T	R	V	K	Y	L	P	T	G	E	K	K	A	Q	I	H	P	E	Q	Y	H	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	P	F	D	D	R
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	D	A	V	I	N	H	M	C	G	N	A	V	S	A	G	T	S	S	T	C	G	S	Y	F	N	P	G	S	R	D	F	P	A	V	P	Y	S	G	W	D	F	N	D	G	K	C	K	T	G	S	G	D	I	E	N	Y	N	D	A	T	Q	V	R	D	C	R	L	S	G	L	L	D	L	A	L	G	K	D	Y
Template Known Secondary structure							S					T	T	S		S	B	S		B	T	T				B	B	G	G	G	T	B	B	T	T	T	T	B		G	G	G	B	S	T	T	T			S	S	S	S	B				T	T								S	B	B	T	T				B		T	T	S
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	A	Q	V	G	M	L	Y	E	D	L	A	G	H	A	A	F	D	G	I	L	F	H
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence		V	R	S	K	I	A	E	Y	M	N	H	L	I	.	D	I	G	V	A	G	F	R	I	D
Template Known Secondary structure															.			T							T
Template Predicted Secondary structure															.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions