Job Description P75906 Confidence 98.31% Date Thu Jan 5 12:15:53 GMT 2012 Rank 26 Aligned Residues 194 % Identity 18% Template c2xn1B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:alpha-galactosidase; PDBTitle: structure of alpha-galactosidase from lactobacillus acidophilus ncfm2 with tris Resolution 2.30 Å

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		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.			.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360												.	.	.	.	.	.	.
Predicted Secondary structure																							.	.																																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.																																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	A	Q	Q	I	I	T	V	Q	E	K	S	P	Q	R	I	M	H	I	D	L	.	.	D	Y	V	Y	D	E	N	L	Q	Q	M	D	R	N	I	D	V	L	I	Q	R	V	K	D	M	Q	I	S	T	V	Y	L	Q	A	F	A	D	P	D	.	.	.	.	.	.	.	.	.	.	.	G	D	G	L	V	K	E
Query Conservation																							.	.																																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.								.	.	.	.																							.	.	.				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.																							.	.	.
Template Sequence		I	H	E	R	I	M	R	S	K	F	K	D	Q	I	R	P	V	L	V	N	N	W	E	A	T	Y	F	D	F	N	.	.	.	.	E	D	K	L	K	T	I	V	D	K	A	K	K	L	G	L	E	M	F	V	L	D	.	.	.	D	G	W	F	G	H	R	D	D	D	N	S	S	L	G	D	W	K	V	Y	K
Template Known Secondary structure						T				T	T	T	T	S													T	T				.	.	.	.															T								.	.	.	T	T	S	B	T	T		S	S	T	T	S		T	T			S	B		T
Template Predicted Secondary structure																																.	.	.	.																							.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.					.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370				.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.		.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure																																						.																																.
Query SS confidence																																						.																																.
Query Sequence		V	W	F	P	N	R	L	L	P	M	K	A	D	I	F	S	R	V	A	W	Q	L	R	T	R	S	G	V	N	I	Y	A	W	M	P	V	.	L	S	W	D	L	D	P	T	L	T	R	V	K	Y	L	P	T	G	E	K	K	A	Q	I	H	P	E	Q	Y	H	R	.	L	S	P	F	D	D	R	V	R	A	Q
Query Conservation																																						.																																.
Alig confidence							.	.	.	.	.	.	.	.										.														.																																.
Template Conservation							.	.	.	.	.	.	.	.										.
Template Sequence		K	K	F	P	N	.	.	.	.	.	.	.	.	G	L	G	H	F	A	D	Y	V	.	H	E	Q	G	L	K	F	G	L	W	F	E	P	E	M	I	S	Y	E	S	N	L	Y	K	E	H	P	D	Y	L	M	H	V	P	G	R	K	P	C	P	S	R	N	Q	Y	V	L	E	L	G	R	K	E	V	R	D	N
Template Known Secondary structure		T	T		T	T	.	.	.	.	.	.	.	.										.			T	T									T	T				S	S	S							G	G	G	B				T	T	S					B	T	T	B			B		T	T	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.										.
Template SS confidence
		392	.	.	.	.									.	.	.	400	.	.	.	.	.		.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	M	L	Y	E	D	L	A	G	H	A	A	F	D	G	I	L	F	H	D	D	A	L	L	S	D	Y	E	D	A	S	A	P	A	I	T	A	Y	Q	Q	A	G	F	S	G	S	L	S	E	I	R	Q	N	P	E	Q	F	K	Q	W	A	R	F	K	S	R	A	L	T	D	F	T	L	E	L	S	A	R	V
Query Conservation
Alig confidence																					.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	F	E	Q	M	V	K	I	L	D	S	K	K	I	D	Y	I	K	W	.	.	D	M	N	R	S	L	S	D	I	Y	E	S	D	L	P	A	D	Q	Q	G	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	H	R	Y	V	L	G	Y	Y	D	L	L	N	K	L
Template Known Secondary structure											T	T	S								.	.				S				S				T	T	S		G	G	G	G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.			.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.																							.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
		526	.	.	.	530	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	I	R	G	P	H	I	K	T
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		V	T	.	R	Y	P	D	I	L	F
Template Known Secondary structure				.			T	T	S
Template Predicted Secondary structure				.
Template SS confidence
		519	520		.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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