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Job DescriptionP75906
Confidence97.38%DateThu Jan 5 12:15:53 GMT 2012
Rank114Aligned Residues126
% Identity15%Templatec1jaeA_
PDB info PDB header:glycosidaseChain: A: PDB Molecule:alpha-amylase; PDBTitle: structure of tenebrio molitor larval alpha-amylase
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   337..340.........350........ .360....... ..370.........380... ......390.........
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Query Sequence  DVLIQRVKDMQISTVYLQAFAD. PDGDGLVKE. VWFPNRLLPMKADIFS. . . . . RVAWQLRTRSGVNIYA. . . . . . . . . .
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Template Sequence  DECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYI. . INTRSGDESAFTDMTRRCNDAGVRIYVDAVINHMTGM
Template Known Secondary structure  TTTTTT



S
BB

TT

GGGGGSB

S
..STTTT


SB

SS
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   26...30.........40.........50.........60...... ...70.........80.........90.........100...
 
   400.........410.........420.........430.. .......440.........450.........460..
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Query Sequence  . . WMPVLSWDLDPTLTRVKYLPTGEKKAQIHPEQY. . . . . . . . . . . . . . . HRLSPFDDRVRAQVGMLYEDLAGHAAFDGI
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Template Sequence  NGVGTSGSSADHDGMNYPAVPYGSGDFHSPCEVNNYQDADNVRNCELVGLRDLNQGSDYVRGVLIDYMNHMI. DLGVAGF
Template Known Secondary structure 
BTTS
BTTTTBBTTTTB
GGGB



B


TT
SBBTTB
BB
TTS.TT

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   104.....110.........120.........130.........140.........150.........160.........170..... ....180..
 
   463..
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Query Sequence  LFH
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Template Sequence  RVD
Template Known Secondary structure  T
Template Predicted Secondary structure 
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   183..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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