Job Description P75906 Confidence 88.84% Date Thu Jan 5 12:15:53 GMT 2012 Rank 201 Aligned Residues 198 % Identity 13% Template c1j0yD_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:beta-amylase; PDBTitle: beta-amylase from bacillus cereus var. mycoides in complex2 with glucose Resolution 2.10 Å

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		311	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.			.
Predicted Secondary structure								.																	.																																																						.	.
Query SS confidence								.																	.																																																						.	.
Query Sequence		K	S	P	Q	R	I	.	M	H	I	D	L	D	Y	V	Y	D	E	N	L	Q	Q	M	.	D	R	N	I	D	V	L	I	Q	R	V	K	D	M	Q	I	S	T	V	Y	L	Q	A	F	A	D	P	D	G	D	G	L	V	K	E	V	W	F	P	N	R	L	L	P	M	K	A	D	I	F	S	R	V	.	.	A
Query Conservation								.																	.																																																						.	.
Alig confidence								.									.	.	.	.					.																									.	.	.	.	.	.	.	.	.								.	.							.					.	.
Template Conservation																	.	.	.	.																														.	.	.	.	.	.	.	.	.								.	.							.
Template Sequence		N	P	D	Y	K	A	Y	L	M	A	P	L	K	K	I	.	.	.	.	P	E	V	T	N	W	E	T	F	E	N	D	L	R	W	A	K	Q	N	G	F	Y	A	I	T	V	D	F	W	.	.	.	.	.	.	.	.	.	W	G	D	M	E	K	N	.	.	G	D	Q	Q	F	D	.	F	S	Y	A	Q	R	F
Template Known Secondary structure			T	T									S	S			.	.	.	.				S															T	T										.	.	.	.	.	.	.	.	.					T		S	.	.	S	T	T				.
Template Predicted Secondary structure																	.	.	.	.																														.	.	.	.	.	.	.	.	.								.	.							.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.					.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.										.	.	.	.	.	.	.			.	60	.	.	.	.		.	.	.	.	.	70	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.					.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.			.	.	430	.	.	.	.	.	.	.	.	.										440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure																					.	.	.	.																							.	.													.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.																							.	.													.	.	.	.	.	.	.	.	.
Query Sequence		W	Q	L	R	T	R	S	G	V	N	I	Y	A	W	M	P	V	L	S	.	.	.	.	W	D	L	D	P	T	L	T	R	V	K	Y	L	P	T	G	E	K	K	A	Q	I	.	.	H	P	E	Q	Y	H	R	L	S	P	F	D	.	.	.	.	.	.	.	.	.	D	R	V	R	A	Q	V	G	M	L	Y	E
Query Conservation																					.	.	.	.																							.	.													.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.																							.	.													.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	Q	S	V	K	N	A	G	M	K	M	I	P	I	I	S	T	H	Q	C	G	G	N	V	G	D	D	C	N	V	P	I	P	S	W	V	W	N	Q	K	S	D	D	S	L	Y	F	K	S	E	T	G	T	V	N	K	E	T	L	N	P	L	A	S	D	V	I	R	K	E	Y	G	E	L	Y	T	A	F	A	A
Template Known Secondary structure								T	T										S		B	S	S	S	T	T					B				G	G	G	G	G	G		S	S	S		S	S				T	T						S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		452	.	.	.																			.	.					.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.																			.	.	490	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	A	.	.	.	.	A	F	D	G	I	L	F	H	D	D	A	L	L	S	D	Y	E	D	A	S	A	P	A	I	T	A	Y	Q	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	S	G
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.	.	.											.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.
Template Sequence		A	M	K	P	Y	K	D	V	I	A	K	I	Y	L	S	G	G	P	A	G	E	L	R	Y	P	S	Y	T	T	S	D	G	T	G	Y	P	S	R	.	.	.	G	K	F	Q	A	Y	T	E	F	A	K	S	K	F	R	L	W	V	L	N	K	Y	G	S	L	N	E	V	N	K	A	W	G	T	K	L	I	S	E
Template Known Secondary structure				G	G	G	G	G	G	B								S	G	G	G	B	S	S						T	T	T	T			T	T	S		.	.	.							S																S	S									T				S	S	G
Template Predicted Secondary structure																																								.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.				190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		492	.	.	.	.	.	.	.	500	.	.	.											.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	S	E	I	R	Q	N	P	E	Q	F	.	.	.	.	.	.	.	.	.	.	K	Q	W	A	R	F	K	S	R	A	L	T	D	F	T	L	E	L	S	A	R	V	K	A
Query Conservation														.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	I	L	P	P	S	D	G	E	Q	F	L	M	N	G	Y	L	S	M	Y	G	K	D	Y	L	E	W	Y	Q	G	I	L	E	N	H	T	K	L	I	G	E	L	A	H	N
Template Known Secondary structure		G	G			S		S								T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions