Job Description P75906 Confidence 97.36% Date Thu Jan 5 12:15:53 GMT 2012 Rank 116 Aligned Residues 172 % Identity 12% Template c1hvxA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: bacillus stearothermophilus alpha-amylase Resolution 2.00 Å

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		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.			.	.	.	.	.	370	.	.	.	.	.	.	.	.					.	380	.	.	.						.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																																	.	.															.	.	.	.						.	.	.	.	.
Query SS confidence																																	.	.															.	.	.	.						.	.	.	.	.
Query Sequence		R	N	I	D	V	L	I	Q	R	V	K	D	M	Q	I	S	T	V	Y	L	Q	A	F	A	D	P	D	G	D	G	L	.	.	V	K	E	V	W	F	P	N	R	L	L	P	M	K	.	.	.	.	A	D	I	F	S	.	.	.	.	.	R	V	A	W	Q	L	R	T	R	S	G	V	N	I	Y	A	W	M	P
Query Conservation																																	.	.															.	.	.	.						.	.	.	.	.
Alig confidence																																	.	.															.	.	.	.						.	.	.	.	.																			.
Template Conservation																																																																																	.
Template Sequence		T	K	V	A	N	E	A	N	N	L	S	S	L	G	I	T	A	L	W	L	P	P	A	Y	K	G	T	S	R	S	D	V	G	Y	G	V	Y	D	L	Y	D	L	G	E	F	N	Q	K	G	A	V	R	T	K	Y	G	T	K	A	Q	Y	L	Q	A	I	Q	A	A	H	A	A	G	M	Q	V	Y	A	D	V	.
Template Known Secondary structure														T	T										S			S	S	T	T			S	S	S				T	T		S	S		S		B	T	T	B	S	S		S	S																T	T								.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		403	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	S	W	D	L	D	P	T	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	F	D	H	K	G	G	A	D	G	T	E	W	V	D	A	V	E	V	N	P	S	D	R	N	Q	E	I	S	G	T	Y	Q	I	Q	A	W	T	K	F	D	F	P	G	R	G	N	T	Y	S	S	F	K	W	R	W	Y	H	F	D	G	V	D	W	D	E	S	R	K	L	S	R	I	Y	K	F	R	G	I	G
Template Known Secondary structure				S						S												T	T							S											B			T	T	T	T	T	S	S					B		G	G	G								T	T	T	T									S	T	T
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	K	Y	L	P	T	G	E	K	K	A	Q	I	H	P	E	Q	Y	H	R	L	S	P	F	D	D	R	V	R	A	Q	V	G	M	L	Y	E	D	L	A	G	H	A	A	F	D	G	I	L	F	H	D	D	A	L	L	S	D	Y	E	D	A	S	A	P	A	I	T	A	Y	Q	Q	A	G	F	S	G	S	L
Query Conservation
Alig confidence																																																					.	.
Template Conservation																																																					.	.
Template Sequence		K	A	W	D	W	E	V	D	T	E	N	G	N	Y	D	Y	L	M	Y	A	D	L	D	M	D	H	P	E	V	V	T	E	L	K	S	W	G	K	W	Y	V	N	T	T	N	I	D	G	F	R	L	.	.	D	A	V	K	H	I	K	F	S	F	F	P	D	W	L	S	Y	V	R	S	Q	T	G	K	P	L	F
Template Known Secondary structure						S	S				T	T	S						S	S					T	T																											.	.	T	T	G	G	G	S		T	T
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
					494	.	.	.	.	.	500	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	S	E	I	R	Q	N	P	E	Q	F	K	Q	W	A	R
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		T	V	G	E	Y	W	S	Y	D	I	N	K	L	H	N	Y	I	M
Template Known Secondary structure									S
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions