Job Description P75906 Confidence 97.51% Date Thu Jan 5 12:15:53 GMT 2012 Rank 109 Aligned Residues 142 % Identity 14% Template c1e9lA_ PDB info PDB header:macrophage secretory protein Chain: A: PDB Molecule:ym1 secretory protein; PDBTitle: the crystal structure of novel mammalian lectin ym12 suggests a saccharide binding site Resolution 2.5 Å

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		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	R	V	R	A	Q	V	G	M	L	Y	E	D	L	A	G	H	A	A	F	D	G	I	L	F	H	D	D	A	L	L	S	D	Y	E	D	A	S	A	P	A	I	T	A	Y	Q	Q	A	G	F	S	G	S	L	S	E	I	R	Q	N	P	E	Q	F	K	Q	W	A	R	F	K	S	R	A	L	T	D	F	T
Query Conservation
Alig confidence																												.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	P	Q	N	R	Q	I	F	I	Q	S	V	I	R	F	L	R	Q	Y	N	F	D	G	L	N	L	.	.	D	W	Q	Y	P	G	S	R	G	S	P	P	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	H	L	F	S	V	L	V
Template Known Secondary structure		S																		T	T		S					.	.			S		S	S	S	T	T			T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																												.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.																															.	.	.	.	.	.	.	.
		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.																	.	.	.	580	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	L	S	A	R	V	K	A	I	R	G	P	H	I	K	T	A	R	N	I	F	A	L	P	V	I	Q	P	E	S	E	A	W	F	A	Q	N	Y	A	D	F	L	K	S	Y	D	W	T	A	I	M	A	M	P	Y	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	A	E	K	S
Query Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.
Template Sequence		K	E	M	R	K	A	F	E	E	E	S	.	V	E	K	D	I	P	R	L	L	L	T	S	T	G	A	G	I	I	D	V	I	K	S	G	Y	K	I	P	E	L	S	Q	S	L	D	Y	I	Q	V	M	T	Y	D	L	H	D	P	K	D	G	Y	T	G	E	N	S	P	L	Y	K	S	P	Y	D	I	G	K	S
Template Known Secondary structure													.			T	T	S											S	S																		S										S		G	G	G	S	B				S	S		S	S			T	T			G	G	G
Template Predicted Secondary structure													.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	Q	W	L	I	Q	L	T	N	Q	I	K	N	I	P	Q	A	K	D	K	S	I	L	E	L	Q	A	Q	N	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	D	L	N	V	D	S	I	I	S	Y	W	K	D	H	G	A	A	S	E	K	L	I	V	G	F	P	A	Y	G	H
Template Known Secondary structure		G	G		S											T	T			G	G	G							S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions