Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP07102
DateThu Jan 5 11:00:08 GMT 2012
Unique Job ID6fa11ac28930314e

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1dkla_
Top template information
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Histidine acid phosphatase
Confidence and coverage
Confidence:100.0% Coverage: 94%
404 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKAILIPFLSLLIPLTPQSAFAQSEPELKLESVVIVSRHGVRAPTKATQLMQDVTPDAWP
Secondary structure 
































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Disorder  ???













?????????
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   .........70.........80.........90.........100.........110.........120
Sequence  TWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGE
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??
???????



















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   .........130.........140.........150.........160.........170.........180
Sequence  AFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGH
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?????




























?







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   .........190.........200.........210.........220.........230.........240
Sequence  RQTAFRELERVLNFPQSNLCLKREKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLT
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???????
???















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   .........250.........260.........270.........280.........290.........300
Sequence  EIFLLQQAQGMPEPGWGRITDSHQWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTA
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??




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   .........310.........320.........330.........340.........350.........360
Sequence  LTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGGALELNWTLPGQPDNTPPGGELVFERW
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Disorder 


??????????














































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   .........370.........380.........390.........400.........410.........420
Sequence  RRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQ
Secondary structure 





































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Disorder 


????








?
????
?

??



????










??










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   .........430..
Sequence  IVNEARIPACSL
Secondary structure 






SS confidence 











Disorder 





??????
Disorder confidence 











 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1dkl chain A

3D model

Region: 24 - 432
Aligned: 404
Modelled: 409
Confidence: 100.0%
Identity: 100%
Fold: Phosphoglycerate mutase-like
Superfamily: Phosphoglycerate mutase-like
Family: Histidine acid phosphatase

Phyre2

PDB 1nt4 chain A

3D model

Region: 22 - 427
Aligned: 387
Modelled: 406
Confidence: 100.0%
Identity: 31%
Fold: Phosphoglycerate mutase-like
Superfamily: Phosphoglycerate mutase-like
Family: Histidine acid phosphatase

Phyre2

PDB 2wni chain C

3D model

Region: 27 - 432
Aligned: 382
Modelled: 394
Confidence: 100.0%
Identity: 25%
PDB header:hydrolase
Chain: C: PDB Molecule:3-phytase;
PDBTitle: crystal structure analysis of klebsiella sp asr1 phytase

Phyre2

PDB 1rpa chain A

3D model

Region: 29 - 428
Aligned: 333
Modelled: 368
Confidence: 100.0%
Identity: 22%
Fold: Phosphoglycerate mutase-like
Superfamily: Phosphoglycerate mutase-like
Family: Histidine acid phosphatase

Phyre2

PDB 2glc chain A

3D model

Region: 28 - 424
Aligned: 321
Modelled: 346
Confidence: 100.0%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:histidine acid phosphatase;
PDBTitle: structure of francisella tularensis histidine acid2 phosphatase bound to orthovanadate

Phyre2

PDB 1nd6 chain A

3D model

Region: 29 - 428
Aligned: 323
Modelled: 347
Confidence: 100.0%
Identity: 20%
Fold: Phosphoglycerate mutase-like
Superfamily: Phosphoglycerate mutase-like
Family: Histidine acid phosphatase

Phyre2

PDB 1ihp chain A

3D model

Region: 17 - 428
Aligned: 353
Modelled: 362
Confidence: 100.0%
Identity: 18%
Fold: Phosphoglycerate mutase-like
Superfamily: Phosphoglycerate mutase-like
Family: Histidine acid phosphatase

Phyre2

PDB 1qfx chain A

3D model

Region: 21 - 432
Aligned: 329
Modelled: 349
Confidence: 100.0%
Identity: 22%
Fold: Phosphoglycerate mutase-like
Superfamily: Phosphoglycerate mutase-like
Family: Histidine acid phosphatase

Phyre2

PDB 2gfi chain B

3D model

Region: 21 - 426
Aligned: 326
Modelled: 345
Confidence: 100.0%
Identity: 20%
PDB header:hydrolase
Chain: B: PDB Molecule:phytase;
PDBTitle: crystal structure of the phytase from d. castellii at 2.3 a

Phyre2

PDB 1qwo chain A

3D model

Region: 22 - 430
Aligned: 352
Modelled: 366
Confidence: 100.0%
Identity: 17%
Fold: Phosphoglycerate mutase-like
Superfamily: Phosphoglycerate mutase-like
Family: Histidine acid phosphatase

Phyre2

PDB 2ikq chain A

3D model

Region: 31 - 144
Aligned: 101
Modelled: 114
Confidence: 98.6%
Identity: 15%
PDB header:signaling protein, immune system
Chain: A: PDB Molecule:suppressor of t-cell receptor signaling 1;
PDBTitle: crystal structure of mouse sts-1 pgm domain in complex with phosphate

Phyre2

PDB 3d4i chain D

3D model

Region: 34 - 142
Aligned: 96
Modelled: 109
Confidence: 98.4%
Identity: 16%
PDB header:hydrolase
Chain: D: PDB Molecule:sts-2 protein;
PDBTitle: crystal structure of the 2h-phosphatase domain of sts-2

Phyre2

PDB 3c7t chain B

3D model

Region: 31 - 144
Aligned: 100
Modelled: 114
Confidence: 98.2%
Identity: 22%
PDB header:hydrolase
Chain: B: PDB Molecule:ecdysteroid-phosphate phosphatase;
PDBTitle: crystal structure of the ecdysone phosphate phosphatase, eppase, from2 bombix mori in complex with tungstate

Phyre2

PDB 1ujc chain A

3D model

Region: 34 - 126
Aligned: 65
Modelled: 78
Confidence: 98.1%
Identity: 29%
PDB header:hydrolase
Chain: A: PDB Molecule:phosphohistidine phosphatase sixa;
PDBTitle: structure of the protein histidine phosphatase sixa2 complexed with tungstate

Phyre2

PDB 3ezn chain B

3D model

Region: 32 - 126
Aligned: 71
Modelled: 77
Confidence: 98.0%
Identity: 18%
PDB header:isomerase
Chain: B: PDB Molecule:2,3-bisphosphoglycerate-dependent phosphoglycerate mutase;
PDBTitle: crystal structure of phosphoglyceromutase from burkholderia2 pseudomallei 1710b

Phyre2

PDB 1yjx chain D

3D model

Region: 31 - 126
Aligned: 72
Modelled: 85
Confidence: 97.9%
Identity: 22%
PDB header:isomerase, hydrolase
Chain: D: PDB Molecule:phosphoglycerate mutase 1;
PDBTitle: crystal structure of human b type phosphoglycerate mutase

Phyre2

PDB 1xq9 chain A

3D model

Region: 34 - 126
Aligned: 69
Modelled: 82
Confidence: 97.8%
Identity: 23%
Fold: Phosphoglycerate mutase-like
Superfamily: Phosphoglycerate mutase-like
Family: Cofactor-dependent phosphoglycerate mutase

Phyre2

PDB 1e58 chain A

3D model

Region: 34 - 126
Aligned: 69
Modelled: 88
Confidence: 97.8%
Identity: 16%
Fold: Phosphoglycerate mutase-like
Superfamily: Phosphoglycerate mutase-like
Family: Cofactor-dependent phosphoglycerate mutase

Phyre2

PDB 3pgm chain A

3D model

Region: 34 - 126
Aligned: 69
Modelled: 80
Confidence: 97.8%
Identity: 17%
Fold: Phosphoglycerate mutase-like
Superfamily: Phosphoglycerate mutase-like
Family: Cofactor-dependent phosphoglycerate mutase

Phyre2

PDB 1qhf chain A

3D model

Region: 34 - 126
Aligned: 62
Modelled: 75
Confidence: 97.8%
Identity: 19%
Fold: Phosphoglycerate mutase-like
Superfamily: Phosphoglycerate mutase-like
Family: Cofactor-dependent phosphoglycerate mutase

Phyre2
1

d1dkla_
2

d1nt4a_
3

c2wniC_
4

d1rpaa_
5

c2glcA_
6

d1nd6a_
7

d1ihpa_
8

d1qfxa_
9

c2gfiB_
10

d1qwoa_
11

c2ikqA_
12

c3d4iD_
13

c3c7tB_
14

c1ujcA_
15

c3eznB_
16

c1yjxD_
17

d1xq9a_
18

d1e58a_
19

d3pgma_
20

d1qhfa_
21



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59



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65






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1dkla_



100.0 100 Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Histidine acid phosphatase
2d1nt4a_



100.0 31 Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Histidine acid phosphatase
3c2wniC_



100.0 25 PDB header:hydrolase
Chain: C: PDB Molecule:3-phytase;
PDBTitle: crystal structure analysis of klebsiella sp asr1 phytase
4d1rpaa_



100.0 22 Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Histidine acid phosphatase
5c2glcA_



100.0 18 PDB header:hydrolase
Chain: A: PDB Molecule:histidine acid phosphatase;
PDBTitle: structure of francisella tularensis histidine acid2 phosphatase bound to orthovanadate
6d1nd6a_



100.0 20 Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Histidine acid phosphatase
7d1ihpa_



100.0 18 Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Histidine acid phosphatase
8d1qfxa_



100.0 22 Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Histidine acid phosphatase
9c2gfiB_



100.0 20 PDB header:hydrolase
Chain: B: PDB Molecule:phytase;
PDBTitle: crystal structure of the phytase from d. castellii at 2.3 a
10d1qwoa_



100.0 17 Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Histidine acid phosphatase
11c2ikqA_



98.6 15 PDB header:signaling protein, immune system
Chain: A: PDB Molecule:suppressor of t-cell receptor signaling 1;
PDBTitle: crystal structure of mouse sts-1 pgm domain in complex with phosphate
12c3d4iD_



98.4 16 PDB header:hydrolase
Chain: D: PDB Molecule:sts-2 protein;
PDBTitle: crystal structure of the 2h-phosphatase domain of sts-2
13c3c7tB_



98.2 22 PDB header:hydrolase
Chain: B: PDB Molecule:ecdysteroid-phosphate phosphatase;
PDBTitle: crystal structure of the ecdysone phosphate phosphatase, eppase, from2 bombix mori in complex with tungstate
14c1ujcA_



98.1 29 PDB header:hydrolase
Chain: A: PDB Molecule:phosphohistidine phosphatase sixa;
PDBTitle: structure of the protein histidine phosphatase sixa2 complexed with tungstate
15c3eznB_



98.0 18 PDB header:isomerase
Chain: B: PDB Molecule:2,3-bisphosphoglycerate-dependent phosphoglycerate mutase;
PDBTitle: crystal structure of phosphoglyceromutase from burkholderia2 pseudomallei 1710b
16c1yjxD_



97.9 22 PDB header:isomerase, hydrolase
Chain: D: PDB Molecule:phosphoglycerate mutase 1;
PDBTitle: crystal structure of human b type phosphoglycerate mutase
17d1xq9a_



97.8 23 Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
18d1e58a_



97.8 16 Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
19d3pgma_



97.8 17 Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
20d1qhfa_



97.8 19 Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
21d1riia_



not modelled 97.8 16 Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
22c3ll4B_



not modelled 97.8 20 PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein ykr043c;
PDBTitle: structure of the h13a mutant of ykr043c in complex with fructose-1,6-2 bisphosphate
23c2i1vB_



not modelled 97.7 17 PDB header:transferase, hydrolase
Chain: B: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6-
PDBTitle: crystal structure of pfkfb3 in complex with adp and2 fructose-2,6-bisphosphate
24d1fzta_



not modelled 97.7 19 Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
25c3d8hB_



not modelled 97.7 16 PDB header:isomerase
Chain: B: PDB Molecule:glycolytic phosphoglycerate mutase;
PDBTitle: crystal structure of phosphoglycerate mutase from cryptosporidium2 parvum, cgd7_4270
26d1k6ma2



not modelled 97.7 19 Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
27c2rflB_



not modelled 97.6 19 PDB header:hydrolase, isomerase
Chain: B: PDB Molecule:putative phosphohistidine phosphatase sixa;
PDBTitle: crystal structure of the putative phosphohistidine phosphatase sixa2 from agrobacterium tumefaciens
28c3f3kA_



not modelled 97.6 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ykr043c;
PDBTitle: the structure of uncharacterized protein ykr043c from saccharomyces2 cerevisiae.
29c2a6pA_



not modelled 97.6 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:possible phosphoglycerate mutase gpm2;
PDBTitle: structure solution to 2.2 angstrom and functional characterisation of2 the open reading frame rv3214 from mycobacterium tuberculosis
30c3f2iD_



not modelled 97.6 21 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:alr0221 protein;
PDBTitle: crystal structure of the alr0221 protein from nostoc, northeast2 structural genomics consortium target nsr422.
31c3dcyA_



not modelled 97.6 16 PDB header:apoptosis regulator
Chain: A: PDB Molecule:regulator protein;
PDBTitle: crystal structure a tp53-induced glycolysis and apoptosis2 regulator protein from homo sapiens.
32c3r7aA_



not modelled 97.5 26 PDB header:transferase
Chain: A: PDB Molecule:phosphoglycerate mutase, putative;
PDBTitle: crystal structure of phosphoglycerate mutase from bacillus anthracis2 str. sterne
33c1k6mA_



not modelled 97.5 19 PDB header:transferase, hydrolase
Chain: A: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6-
PDBTitle: crystal structure of human liver 6-phosphofructo-2-2 kinase/fructose-2,6-bisphosphatase
34d1bifa2



not modelled 97.5 21 Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
35c3mxoB_



not modelled 97.5 25 PDB header:hydrolase
Chain: B: PDB Molecule:serine/threonine-protein phosphatase pgam5, mitochondrial;
PDBTitle: crystal structure oh human phosphoglycerate mutase family member 52 (pgam5)
36c3e9eB_



not modelled 97.5 16 PDB header:hydrolase
Chain: B: PDB Molecule:zgc:56074;
PDBTitle: structure of full-length h11a mutant form of tigar from danio rerio
37d1tipa_



not modelled 97.4 18 Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
38c3eozB_



not modelled 97.4 26 PDB header:isomerase
Chain: B: PDB Molecule:putative phosphoglycerate mutase;
PDBTitle: crystal structure of phosphoglycerate mutase from plasmodium2 falciparum, pfd0660w
39d2hhja1



not modelled 97.4 16 Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
40c1bifA_



not modelled 97.4 21 PDB header:bifunctional enzyme
Chain: A: PDB Molecule:6-phosphofructo-2-kinase/ fructose-2,6-bisphosphatase;
PDBTitle: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase bifunctional2 enzyme complexed with atp-g-s and phosphate
41c3fjyB_



not modelled 97.3 18 PDB header:hydrolase
Chain: B: PDB Molecule:probable mutt1 protein;
PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis
42c2qniA_



not modelled 97.1 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu0299;
PDBTitle: crystal structure of uncharacterized protein atu0299
43d1v37a_



not modelled 96.7 23 Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
44c3hjgB_



not modelled 96.7 12 PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-ribazole-5'-phosphate phosphatase
PDBTitle: crystal structure of putative alpha-ribazole-5'-phosphate2 phosphatase cobc from vibrio parahaemolyticus
45d1h2ea_



not modelled 96.7 27 Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
46c2l3hA_



not modelled 68.4 10 PDB header:hydrolase
Chain: A: PDB Molecule:prostatic acid phosphatase;
PDBTitle: nmr structure in a membrane environment reveals putative amyloidogenic2 regions of the sevi precursor peptide pap248-286
47d1p2za2



not modelled 21.8 31 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Group II dsDNA viruses VP
Family:Adenovirus hexon
48d1rhoa_



not modelled 13.1 23 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:RhoGDI-like
49d1fsoa_



not modelled 12.9 23 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:RhoGDI-like
50d1ajwa_



not modelled 12.9 23 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:RhoGDI-like
51c2k87A_



not modelled 12.8 13 PDB header:viral protein, rna binding protein
Chain: A: PDB Molecule:non-structural protein 3 of replicase polyprotein 1a;
PDBTitle: nmr structure of a putative rna binding protein (sars1) from sars2 coronavirus
52d1mg7a1



not modelled 11.2 20 Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Early switch protein XOL-1, N-terminal domain
53c2bviK_



not modelled 11.2 30 PDB header:virus
Chain: K: PDB Molecule:hexon protein;
PDBTitle: the quasi-atomic model of human adenovirus type 52 capsid (part 2)
54c2k6uA_



not modelled 10.9 27 PDB header:hormone
Chain: A: PDB Molecule:insulin-like 3 a chain;
PDBTitle: the solution structure of a conformationally restricted2 fully active derivative of the human relaxin-like factor3 (rlf)
55d1doab_



not modelled 10.7 23 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:RhoGDI-like
56c2h8bA_



not modelled 10.5 27 PDB header:hormone/growth factor
Chain: A: PDB Molecule:insulin-like 3;
PDBTitle: solution structure of insl3
57d1kmta_



not modelled 10.1 23 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:RhoGDI-like
58d1ds6b_



not modelled 8.5 38 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:RhoGDI-like
59d1hh4e_



not modelled 8.3 23 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:RhoGDI-like
60c2k6tA_



not modelled 8.3 27 PDB header:hormone
Chain: A: PDB Molecule:insulin-like 3 a chain;
PDBTitle: solution structure of the relaxin-like factor
61c1mg7B_



not modelled 7.4 20 PDB header:gene regulation
Chain: B: PDB Molecule:early switch protein xol-1 2.2k splice form;
PDBTitle: crystal structure of xol-1
62c2qz5A_



not modelled 6.0 10 PDB header:signaling protein, lipid binding protein
Chain: A: PDB Molecule:axin interactor, dorsalization associated
PDBTitle: crystal structure of the c-terminal domain of aida
63d1v7za_



not modelled 5.7 21 Fold:Creatininase
Superfamily:Creatininase
Family:Creatininase
64d1egaa2



not modelled 5.6 13 Fold:Alpha-lytic protease prodomain-like
Superfamily:Prokaryotic type KH domain (KH-domain type II)
Family:Prokaryotic type KH domain (KH-domain type II)
65d2zdra2



not modelled 5.4 21 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:NeuB-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0