Job Description P76175 Confidence 100.00% Date Thu Jan 5 12:20:07 GMT 2012 Rank 5 Aligned Residues 384 % Identity 20% Template c3orgB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:cmclc; PDBTitle: crystal structure of a eukaryotic clc transporter Resolution 3.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	L	L	I	A	T	V	V	G	I	L	A	A	F	A	V	A	G	F	R	H	A	M	L	L	L	E	W	L	F	L	N	N	D	S	G	S	L	V	N	A	A	T	N	L	S	P	W	R	R	L	L	T	P	A	L	G	G	L	A	A	G	L	L	L	M	G	W	Q	K	F	T	Q	Q	R	P	H	A	P
Query Conservation
Alig confidence																																								.	.	.	.																													.	.
Template Conservation																																								.	.	.	.																													.	.
Template Sequence		R	L	V	C	F	L	T	L	L	G	V	T	A	A	L	F	I	F	A	V	D	L	A	V	H	G	L	E	E	L	R	M	K	I	S	R	L	A	.	.	.	.	G	R	F	A	G	Y	I	L	Y	V	V	S	G	V	A	L	C	L	L	S	T	F	W	C	A	V	L	S	.	.	T	E	A	E	G	S	G	L
Template Known Secondary structure																																							S	.	.	.	.																											S		.	.	G	G	G		B		S
Template Predicted Secondary structure																																								.	.	.	.																													.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.					.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.						.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.							.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure											.	.	.	.	.																																														.	.	.	.	.	.
Query SS confidence											.	.	.	.	.																																														.	.	.	.	.	.
Query Sequence		T	D	Y	M	E	A	L	Q	T	.	.	.	.	.	D	G	Q	F	D	Y	A	A	S	L	V	K	S	L	A	S	L	L	V	V	T	S	G	S	A	I	G	R	E	G	A	M	I	L	L	A	A	L	A	A	S	C	F	A	Q	.	.	.	.	.	.	R	F	T	P	R	Q	E	W	K	L	W	I	A	C	G
Query Conservation											.	.	.	.	.																																														.	.	.	.	.	.
Alig confidence											.	.	.	.	.																																														.	.	.	.	.	.
Template Conservation
Template Sequence		P	Q	M	K	S	I	L	S	G	F	Y	D	K	M	R	S	A	L	E	L	R	V	L	F	A	K	A	L	G	L	I	C	A	I	G	G	G	L	P	V	G	W	E	G	P	N	V	H	I	A	C	I	I	A	H	Q	F	Y	R	L	G	V	F	K	E	L	C	T	D	R	A	L	R	L	Q	T	L	A	A	A
Template Known Secondary structure									T	T	T					G	G	G	G	S																	T	T		S		B	S																T	T	S	T	T	T	T					S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	A	G	M	A	A	A	Y	R	A	P	L	A	G	S	L	F	I	A	E	V	L	F	G	T	M	M	L	A	S	L	G	P	V	I	I	S	A	V	V	A	L	L	V	S	N	L	I	N	H	S	D	A	L	L	Y	N	V	Q	L	S	V	T	V	Q	A	R	D	Y	A	L	I	I	S	T	G	V	L	A
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	A	V	G	L	A	S	S	F	G	A	P	L	G	G	V	L	Y	S	I	E	T	I	A	S	F	Y	L	V	Q	A	F	W	K	G	V	L	S	A	L	S	G	A	I	V	Y	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	V	S	R	T	Q	T	L	L	Y	A	I	L	G	A	L	M
Template Known Secondary structure											T													T		S	S			T	T																T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S		T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.																.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	C	G	P	L	L	L	T	L	M	N	A	C	H	R	G	F	V	S	L	K	L	A	P	P	W	Q	L	A	L	G	G	L	I	V	G	L	L	S	L	F	T	P	A	V	W	G	N	G	Y	S	T	V	Q	S	F	L	T	A	P	P	L	L	M	I	I	A	G	I	F	L	C	K	L	C	A	V	L	A
Query Conservation
Alig confidence																																													.	.	.	.																	.	.	.
Template Conservation																																													.	.	.	.																	.	.	.
Template Sequence		G	V	L	G	A	L	F	I	R	C	V	R	S	I	Y	E	L	R	M	R	H	Y	P	G	T	N	R	Y	F	L	V	G	V	V	A	L	F	A	S	A	L	Q	Y	.	.	.	.	P	F	P	R	A	T	I	N	D	L	F	K	A	V	T	E	.	.	.	L	I	L	M	P	I	I	K	F	I	L	V	A	L
Template Known Secondary structure																					S	S	S	T	T			T															T	T	.	.	.	.	T											S					.	.	.	S	S
Template Predicted Secondary structure																																													.	.	.	.																	.	.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.					.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.				390	.	.	.	.	.	.	.	.	.	400	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	G	S	G	A	P	G	G	V	F	T	P	T	L	F	I	G	L	A	I	G	M	L	Y	G	R	S	L	G	L	W	F	P	D	G	E	E	I	T	L	L	L	G	L	T	G	M	A	T	L	L	A	A	T	T	H	A	P	I	M	S	T	L	M	I	C	E	M	T	G	E	Y	Q	L	L	P	G	L	L
Query Conservation
Alig confidence																																					.																						.
Template Conservation																																					.																						.
Template Sequence		S	I	G	L	P	L	P	A	G	V	F	V	P	S	F	L	I	G	A	G	F	G	R	L	Y	G	E	L	M	R	V	V	F	G	N	.	A	I	V	P	G	S	Y	A	V	V	G	A	A	A	F	T	A	G	V	T	R	.	A	L	S	C	A	V	I	I	F	E	V	T	G	Q	I	R	H	L	V	P	V	L
Template Known Secondary structure			T	T	S	S	S	B		B																										T	.	T	S																				.		T	T									T				S		S
Template Predicted Secondary structure																																					.																						.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.		.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.		.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	C	V	I	A	S	V	I	S	R	T	L	H	R	D	S	I	Y	R	Q	H	T	A	Q	H
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence		I	S	V	L	L	A	V	I	V	G	N	A	F	.	N	R	S	L	Y	E	T	L	V	L	M	K
Template Known Secondary structure															.												T
Template Predicted Secondary structure															.
Template SS confidence
		498	.	500	.	.	.	.	.	.	.	.	.	510		.	.	.	.	.	.	.	.	.	520	.	.