Job Description P76175 Confidence 100.00% Date Thu Jan 5 12:20:07 GMT 2012 Rank 4 Aligned Residues 409 % Identity 24% Template c3nd0A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sll0855 protein; PDBTitle: x-ray crystal structure of a slow cyanobacterial cl-/h+ antiporter Resolution 3.20 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	L	L	I	A	T	V	V	G	I	L	A	A	F	A	V	A	G	F	R	H	A	M	L	L	L	E	W	L	F	L	N	N	D	S	G	S	L	V	N	A	A	T	N	L	S	P	W	R	R	L	L	T	P	A	L	G	G	L	A	A	G	L	L	L	M	G	W	Q	K	F	T	Q	Q	R	P	H	A	P
Query Conservation
Alig confidence																																						.	.																																	.	.
Template Conservation																																						.	.																																	.	.
Template Sequence		R	T	L	V	A	A	I	V	V	G	L	I	T	G	V	L	G	A	G	F	K	S	A	V	N	N	M	L	Q	W	R	S	Q	L	A	Q	.	.	I	L	A	P	I	P	P	L	A	W	L	V	T	A	L	I	S	G	G	M	V	A	L	S	F	W	L	M	K	R	F	A	.	.	P	D	T	S	G	S	G	I
Template Known Secondary structure																																						.	.		S	T	T	S		T																						T	T	T		.	.	G	G	G	S	B		S
Template Predicted Secondary structure																																						.	.																																	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.
		83	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure										.																																																		.
Query SS confidence										.																																																		.
Query Sequence		T	D	Y	M	E	A	L	Q	.	T	D	G	Q	F	D	Y	A	A	S	L	V	K	S	L	A	S	L	L	V	V	T	S	G	S	A	I	G	R	E	G	A	M	I	L	L	A	A	L	A	A	S	C	F	A	Q	R	F	T	.	P	R	Q	E	W	K	L	W	I	A	C	G	A	A	A	G	M	A	A	A	Y
Query Conservation										.																																																		.
Alig confidence										.																																																		.
Template Conservation
Template Sequence		P	Q	I	E	G	H	L	E	G	K	L	P	L	V	W	Q	R	V	L	P	I	K	L	V	G	G	F	L	S	L	G	A	G	M	L	A	G	F	E	G	P	T	I	Q	M	G	G	S	I	G	Q	M	T	G	G	W	F	K	A	T	Q	E	N	Q	R	I	L	I	A	V	G	A	G	A	G	L	A	T	A	F
Template Known Secondary structure								T	T	S	S	S																					T	T		S			T																			T	T
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.			.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		R	A	P	L	A	G	S	L	F	I	A	E	V	L	F	G	T	M	M	L	A	.	.	S	L	G	P	V	I	I	S	A	V	V	A	L	L	V	S	N	L	I	N	H	S	D	A	L	L	Y	N	V	Q	L	S	V	T	V	Q	A	R	D	Y	A	L	I	I	S	T	G	V	L	A	G	L	C	G	P	L	L
Query Conservation																							.	.
Alig confidence																							.	.																									.
Template Conservation																																																	.
Template Sequence		N	A	P	L	A	G	V	A	L	I	G	E	E	M	H	P	R	F	R	S	Q	T	L	A	Y	H	S	L	L	F	G	C	V	M	A	T	I	I	L	R	M	I	R	G	Q	S	A	.	I	I	S	L	T	E	F	K	R	V	P	L	D	S	L	W	M	F	I	I	L	G	I	L	F	G	V	M	G	Y	T	F
Template Known Secondary structure		T											S	S	S					S	S			T	T																			T		S	S		.	S	S			T	T						G	G	G
Template Predicted Secondary structure																																																	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		L	T	L	M	N	A	C	H	R	G	F	V	S	L	K	.	L	A	P	P	W	Q	L	A	L	G	G	L	I	V	G	L	L	S	L	F	T	P	A	V	W	G	N	G	Y	S	T	V	Q	S	F	L	T	A	P	P	L	L	M	I	I	A	G	I	F	L	C	K	L	C	A	V	L	A	S	S	G	S	G	A
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		N	R	G	L	F	K	V	L	D	W	F	D	R	L	P	P	L	A	T	K	W	K	G	F	L	L	G	S	I	I	G	I	L	S	L	F	P	L	P	L	T	D	G	G	D	N	A	V	L	W	A	F	N	S	Q	S	H	F	S	T	L	I	L	V	F	C	G	R	F	L	L	T	L	I	C	Y	G	S	G	A
Template Known Secondary structure														T																					T	T	S	S	S	S		S	S	S	S								T	T	S																								T	T
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	G	V	F	T	P	T	L	F	I	G	L	A	I	G	M	L	Y	G	R	S	L	G	L	W	F	P	D	G	E	E	I	T	L	L	L	G	L	T	G	M	A	T	L	L	A	A	T	T	H	A	P	I	M	S	T	L	M	I	C	E	M	T	G	E	Y	Q	L	L	P	G	L	L	I	A	C	V	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	G	G	I	F	A	P	M	L	G	I	A	S	I	V	S	V	A	M	A	R	H	F	H	L	L	F	P	S	Q	I	P	E	P	A	V	M	A	I	A	G	M	G	A	L	V	A	A	T	V	R	A	P	L	T	A	I	L	L	T	I	E	M	T	D	N	Y	F	V	I	L	P	L	L	V	T	C	L	V	A
Template Known Secondary structure		B			S																								T	T	T		S	S	T							T	T	S								S												T	T				T	T
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	I	S	R	T	L	H	R	D	S	I	Y	R	Q	H	T	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	V	A	E	A	L	G	G	K	P	I	Y	T	V	L	L	E	R
Template Known Secondary structure						T	T	S
Template Predicted Secondary structure
Template SS confidence
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.