Job Description P76175 Confidence 100.00% Date Thu Jan 5 12:20:07 GMT 2012 Rank 1 Aligned Residues 411 % Identity 24% Template c2ht2B_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca; PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex Resolution 3.32 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	H	R	L	L	I	A	T	V	V	G	I	L	A	A	F	A	V	A	G	F	R	H	A	M	L	L	L	E	W	L	F	L	N	N	D	S	G	S	L	V	N	A	A	T	N	L	S	P	W	R	R	L	L	T	P	A	L	G	G	L	A	A	G	L	L	L	M	G	W	Q	K	F	T	Q	Q	R	P	H
Query Conservation
Alig confidence																																													.	.																												.	.
Template Conservation																																													.	.																												.	.
Template Sequence		P	L	A	I	L	F	M	A	A	V	V	G	T	L	V	G	L	A	A	V	A	F	D	K	G	V	A	W	L	Q	N	Q	R	M	G	A	L	V	H	T	A	D	N	.	.	Y	P	L	L	L	T	V	A	F	L	C	S	A	V	L	A	M	F	G	Y	F	L	V	R	K	Y	A	.	.	P	E	A	G	G	S
Template Known Secondary structure																																									T		S		.	.																									T	T		.	.	G	G	G	S	S
Template Predicted Secondary structure																																													.	.																												.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.			.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure														.																																																.	.
Query SS confidence														.																																																.	.
Query Sequence		A	P	T	D	Y	M	E	A	L	Q	T	D	.	G	Q	F	D	Y	A	A	S	L	V	K	S	L	A	S	L	L	V	V	T	S	G	S	A	I	G	R	E	G	A	M	I	L	L	A	A	L	A	A	S	C	F	A	Q	R	F	T	.	.	P	R	Q	E	W	K	L	W	I	A	C	G	A	A	A	G	M	A
Query Conservation														.																																																.	.
Alig confidence														.																																																.	.
Template Conservation
Template Sequence		G	I	P	E	I	E	G	A	L	E	D	Q	R	P	V	R	W	W	R	V	L	P	V	K	F	F	G	G	L	G	T	L	G	G	G	M	V	L	G	R	E	G	P	T	V	Q	I	G	G	N	I	G	R	M	V	L	D	I	F	R	L	K	G	D	E	A	R	H	T	L	L	A	T	G	A	A	A	G	L	A
Template Known Secondary structure		S									T	T		S																					T	T		S		B	S																			T	T			S
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence		A	A	Y	R	A	P	L	A	G	S	L	F	I	A	E	V	L	F	G	T	M	M	L	A	S	.	.	L	G	P	V	I	I	S	A	V	V	A	L	L	V	S	N	L	I	N	H	S	D	A	L	L	Y	N	V	Q	L	S	V	T	V	Q	A	R	D	Y	A	L	I	I	S	T	G	V	L	A	G	L	C	G
Query Conservation																											.	.
Alig confidence																											.	.																								.
Template Conservation																																																				.
Template Sequence		A	A	F	N	A	P	L	A	G	I	L	F	I	I	E	E	M	R	P	Q	F	R	Y	T	L	I	S	I	K	A	V	F	I	G	V	I	M	S	T	I	M	Y	R	I	F	N	H	E	V	A	.	L	I	D	V	G	K	L	S	D	A	P	L	N	T	L	W	L	Y	L	I	L	G	I	I	F	G	I	F	G
Template Known Secondary structure					T										T	T	T	T	S		S	S	S																									T	T			.	S											G	G	G
Template Predicted Secondary structure																																																				.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260					.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																											.	.	.	.
Query SS confidence																											.	.	.	.
Query Sequence		P	L	L	L	T	L	M	N	A	C	H	R	G	F	V	S	L	K	L	A	P	P	W	Q	L	.	.	.	.	A	L	G	G	L	I	V	G	L	L	S	L	F	T	P	A	V	W	G	N	G	Y	S	T	V	Q	S	F	L	T	A	P	P	L	L	M	I	I	A	G	I	F	L	C	K	L	C	A	V	L	A
Query Conservation																											.	.	.	.
Alig confidence																											.	.	.	.
Template Conservation
Template Sequence		P	I	F	N	K	W	V	L	G	M	Q	D	L	L	H	R	V	H	G	G	N	I	T	K	W	V	L	M	G	G	A	I	G	G	L	C	G	L	L	G	F	V	A	P	A	T	S	G	G	G	F	N	L	I	P	I	A	T	A	G	N	F	S	M	G	M	L	V	F	I	F	V	A	R	V	I	T	T	L	L
Template Known Secondary structure																		T	T	T	T																								G	G	G	S	S		S	T	T							T	T		S
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	G	S	G	A	P	G	G	V	F	T	P	T	L	F	I	G	L	A	I	G	M	L	Y	G	R	S	L	G	L	W	F	P	D	G	E	E	I	T	L	L	L	G	L	T	G	M	A	T	L	L	A	A	T	T	H	A	P	I	M	S	T	L	M	I	C	E	M	T	G	E	Y	Q	L	L	P	G	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	F	S	S	G	A	P	G	G	I	F	A	P	M	L	A	L	G	T	V	L	G	T	A	F	G	M	V	A	V	E	L	F	P	Q	Y	H	L	E	A	G	T	F	A	I	A	G	M	G	A	L	L	A	A	S	I	R	A	P	L	T	G	I	I	L	V	L	E	M	T	D	N	Y	Q	L	I	L	P	M	I
Template Known Secondary structure					T	T		S	S	B	S																					T	T		G	G	G	T											T	T	T					T	S																	G	G	G
Template Predicted Secondary structure
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	C	V	I	A	S	V	I	S	R	T	L	H	R	D	S	I	Y	R	Q	H	T	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	G	L	G	A	T	L	L	A	Q	F	T	G	G	K	P	L	H	S	A	I	L	A	R
Template Known Secondary structure														T	T
Template Predicted Secondary structure
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.