Job Description P52074 Confidence 97.98% Date Thu Jan 5 12:05:10 GMT 2012 Rank 12 Aligned Residues 201 % Identity 14% Template c1c4cA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.						90	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.
Query Sequence		R	A	C	V	H	C	G	F	C	T	A	T	C	P	T	Y	Q	L	L	G	D	E	L	D	G	P	R	G	R	I	Y	L	I	K	Q	V	L	E	G	N	E	V	T	L	K	T	Q	E	H	L	D	R	C	L	T	C	R	N	C	E	T	T	C	P	S	G	V	.	.	.	.	.	R	Y	H	N	L	L	D	I
Query Conservation																																																																					.	.	.	.	.
Alig confidence																														.	.	.	.	.																.	.																		.	.	.	.	.
Template Conservation																														.	.	.	.	.																.	.
Template Sequence		T	K	C	L	L	C	G	R	C	V	N	A	C	G	K	N	T	E	T	Y	A	M	K	F	L	N	K	N	.	.	.	.	.	G	K	T	I	I	G	A	E	D	E	K	C	F	D	D	.	.	T	N	C	L	L	C	G	Q	C	I	I	A	C	P	V	A	A	L	S	E	K	S	H	M	D	R	V	K	N	A
Template Known Secondary structure		T	S															T	S				S						T	.	.	.	.	.	T						S	G	G	G			G	G	G	.	.	S	S												S	S	S	S
Template Predicted Secondary structure																														.	.	.	.	.																.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.						.	.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	D	I	V	E	Q	K	V	K	R	P	L	P	E	R	I	L	R	E	G	L	R	Q	V	V	P	R	P	A	V	F	R	A	L	T	Q	V	G	L	V	L	R	P	F	L	P	E	Q	V	R	A	K	L	P	A	E	T	V	K	A	K	P	R	P	P	L	R	H	K	R	R	V	L	M	L	E	G	C	A
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	E	K	H	V	I	V	A	M	A	P	S	V
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T									T	T	G
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		218	.																																																																	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		178	.	180	.	.	.	.									.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.
Query Sequence		Q	P	T	L	S	P	N	.	.	.	.	.	.	.	.	T	N	A	A	T	A	R	V	L	D	R	L	G	I	S	V	M	P	A	N	E	A	G	C	C	G	A	V	D	Y	H	L	N	A	Q	E	K	G	L	A	R	A	R	N	N	I	D	A	W	W	P	A	I	E	A	G	A	E	A	I	L	Q	T	A	S
Query Conservation									.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.																								.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.																								.	.
Template Sequence		R	A	S	I	G	E	L	F	N	M	G	F	G	V	D	V	T	G	K	I	Y	T	A	L	R	Q	L	G	F	D	K	I	F	D	I	N	F	.	.	.	.	.	.	.	.	.	.	G	A	D	M	T	I	M	E	E	A	T	E	L	V	Q	R	I	E	N	N	G	P	F	.	.	P	M	F	T	S	C	C	P
Template Known Secondary structure		G	G	T	G	G	G	G	G	T			S	S														T	T		S								.	.	.	.	.	.	.	.	.	.																		T	T	T		S	S	.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.																								.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270											.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.			.	.	.	.	.	.	300	.
		250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		G	C	G	A	F	V	K	E	.	Y	G	Q	M	L	K	N	D	A	L	Y	A	D	K	A	R	Q	V	S	E	L	A	V	D	L	V	E	L	L	R	E	E	P	L	E	K	L	A	I	R	G	D	K	K	L	A	F	H	C	P	C	T	L	Q	H
Query Conservation										.
Alig confidence										.																												.	.									.	.	.	.
Template Conservation																																						.	.									.	.	.	.
Template Sequence		G	W	V	R	Q	A	E	N	Y	Y	P	E	L	L	N	N	L	S	S	A	K	S	P	Q	Q	I	F	G	T	A	S	K	T	Y	Y	P	.	.	S	I	S	G	L	D	P	K	.	.	.	.	N	V	F	T	V	T	V	M	P	C	T	S	K	K
Template Known Secondary structure										T		G	G	G	T	T	T	B		S	B												T	T				.	.			S	S			G	G	.	.	.	.	G								S		S
Template Predicted Secondary structure																																						.	.									.	.	.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.					.	.	.	.	350	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions