 |
Job Description | P0C8J6 | Confidence | 73.83% | Date | Thu Jan 5 11:30:05 GMT 2012 |
Rank | 317 | Aligned Residues | 111 |
% Identity | 16% | Template | d1kbia1 |
SCOP info | TIM beta/alpha-barrel
| FMN-linked oxidoreductases
| FMN-linked oxidoreductases
|
Resolution | 2.30 |
|
 |
  |   |
155 | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . |
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | N | P | A | Q | A | R | E | F | A | E | A | T | G | I | D | S | L | A | V | A | I | G | T | A | H | G | M | Y | A | S | A | P | A | L | D | F | S | R | L | E | N | I | R | Q | W | V | N | . |
. |
. |
. |
. |
. |
. |
L | P | L | V | L | H | G | A | S | G | L | S | T | K | D | I | Q | Q | T | I | K | L | G | I | C |
Query Conservation |   |
|   |
|
|
|
|   |   |
|
|   |   |
|
|
|
|   |
|
|
|
|
|
|
|   |
|
|   |
|   |   |   |
|   |
|
|   |   |   |
|   |   |
|   |   |   |   |   | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|   |   |   |
|   |   |   |   |
|
|   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|
|   |   |
|   |   | . |   |
|
|
|
|
|   |
|
|
|
|
|
|
|   |
|
|   |   |   |   |   |   | . | . |   |   |
|
|   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|
|
|
|
|
|
|
|   |
| . |   |
|
|   |
|
|
|
|
|
|
|
|
Template Sequence |   |
Q | R | T | E | D | V | I | K | A | A | E | . |
I | G | V | S | G | V | V | L | S | N | H | G | G | R | Q | L | D | F | S | R | A | P | I | . |
. |
E | V | L | A | E | T | M | P | I | L | E | Q | R | N | L | K | D | K | L | E | V | F | V | D | G | G | V | R | R | G | . |
T | D | V | L | K | A | L | C | L | G | A | K |
Template Known Secondary structure |   |
| S |  |  |  |  |  |  |  |  |  | . | T | T |
| S |  |  |  |  |
|
| T | T | T | T | S | S | T | T |
|
|
|  |  | . | . |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
| B | T | T | B |  |  |  |  |  | S | S |
|
| S |  | . |  |  |  |  |  |  |  |  |  | T |
| S |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  | . |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  | . |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
352 | . | . | . | . | . | . | . | 360 | . | . | |
. | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | |
|
. | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | |
. | . | . | . | 420 | . | . | . | . | . | . | . |
  |
  |   |
228 | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | I | N | V | A | T | E | L | K | N | A | F | S | Q | A | L | K | N | Y | L | T | E | H | P | E | A | T | D | P | R | D | Y | L | Q | S | A | K | S | A | M | R | D | V | V | S | K | V | I | A | D | C | G | C | E | G |
Query Conservation |   |
|
|
|
|   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|   |   |
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|
|   |
|   |   |
|
|   |   |
|   |   | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |   |   |
|   |   |
|   |   |
|
|   |   |   |
|   |
|   |
|   |   |
|
Template Sequence |   |
G | V | G | L | G | R | P | F | L | Y | A | N | S | C | Y | G | R | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | V | E | K | A | I | E | I | L | R | D | E | I | E | M | S | M | R | L | L | G | V | T | S |
Template Known Secondary structure |   |
 |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
| B |
Template Predicted Secondary structure |   |
 |  |  |  |
|  |  |  |  |  |  |  |  |  |
|
|  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
428 | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|