Job Description P0C8J6 Confidence 97.19% Date Thu Jan 5 11:30:05 GMT 2012 Rank 65 Aligned Residues 197 % Identity 14% Template c3thaB_ PDB info PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: tryptophan synthase subunit alpha from campylobacter jejuni. Resolution 2.37 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.																		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.						.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Query Sequence		H	N	L	E	T	M	Q	V	V	V	E	T	A	A	N	L	H	A	P	V	I	I	A	G	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	F	T	H	A	G	T	E	N	L	L	A	L	V	S	A	M	A	K	Q	Y	H	H	P	L	A	I	H	L	.	.	.	.	.	D	H
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.									.	.	.	.	.
Template Conservation																																																																	.	.
Template Sequence		P	N	L	Q	T	S	E	A	F	L	Q	R	L	D	Q	S	P	I	D	I	L	E	L	G	V	A	Y	S	D	P	I	A	D	G	E	I	I	A	D	A	A	K	I	A	L	D	Q	G	V	D	I	H	S	V	F	E	L	L	A	R	I	K	T	.	.	K	K	A	L	V	F	X	V	Y	Y	N	L	I	F	S
Template Known Secondary structure		S											T	G	G	G	S	S		S								S	S					S	S													T	T												T				.	.	S	S
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.			.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	T	K	F	D	D	I	A	Q	K	V	R	S	G	V	R	S	V	M	I	D	A	S	H	L	P	F	A	Q	N	I	S	R	V	K	E	V	V	D	F	C	H	R	F	D	V	S	V	E	A	E	L	G	Q	L	G	G	Q	E	D	D	V	Q	V	N	E	A	D	A	L	Y	T	N	P	A	Q	A	R	E	F
Query Conservation
Alig confidence																						.	.							.	.	.	.																	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.							.	.	.	.																	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	G	L	E	K	F	V	K	K	A	K	S	L	G	I	C	A	L	I	V	.	.	P	E	L	S	F	E	.	.	.	.	E	S	D	D	L	I	K	E	C	E	R	Y	N	I	A	L	.	.	.	I	T	L	V	S	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	P	K	E	R	V	K	K	L
Template Known Secondary structure														T	T							.	.	T	T			G	G	.	.	.	.	G												T				.	.	.						T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																						.	.							.	.	.	.																	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.					.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.														.	150	.	.	.	.	.	.	.
		164	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure						.																																																																								.	.	.	.
Query SS confidence						.																																																																								.	.	.	.
Query Sequence		A	E	A	T	.	G	I	D	S	L	A	V	A	I	G	T	A	H	G	M	Y	A	S	A	P	A	L	D	F	S	R	L	E	N	I	R	Q	W	V	N	L	P	L	V	L	H	G	A	S	G	L	S	T	K	D	I	Q	Q	T	I	K	L	G	I	C	K	I	N	V	A	T	E	L	K	N	A	.	.	.	.
Query Conservation						.																																																																								.	.	.	.
Alig confidence						.																							.																		.	.																														.	.	.	.
Template Conservation																													.																		.	.
Template Sequence		V	K	H	A	K	G	F	I	Y	L	L	A	S	I	G	I	T	G	T	K	S	V	E	E	A	I	L	.	Q	D	K	V	K	E	I	R	S	F	T	N	L	P	I	F	V	.	.	G	F	G	I	Q	N	N	Q	D	V	K	R	X	R	K	V	A	D	G	V	I	V	G	T	S	I	V	K	C	F	K	Q	G
Template Known Secondary structure			T	T			S								S		S	S											.									T	T			S					.	.		S	S			S	S							T	T	T	S	S												T	T	S	S
Template Predicted Secondary structure																													.																		.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	Q	A	L	K	N	Y	L	T	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	D	I	I	X	K	D	I	E	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions