|   |
90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | |
|
|
|
|
|
. | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . | . | . | . | . |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | A | Q | K | V | R | S | G | V | R | S | V | M | I | . |
. |
. |
. |
. |
. |
D | A | S | H | L | P | F | A | Q | N | I | S | R | V | K | E | V | V | D | F | C | H | R | F | D | V | S | V | E | A | E | L | G | Q | L | G | G | Q | E | D | D | V | Q | V | N | E | A | D | A | L | Y | T | N | P | A | Q | A | R | E | F |
Query Conservation |   |
|   |   |
|
|   |   |
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|   |
|
|   |
|
|
|
|   |   |
|   |
|
|
|   |   |
|
|   |   |
|
|   |
|
|
|
|
|
|   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|   |
|   |
|
|
|
|
|
|
|
|
|   |   |   |
|
|   |   |   |
|   |   |   |   |
|   |   |   |
|   |   |
|   |
|   |
|   |   |   |
|
|
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
A | K | R | I | K | E | A | G | A | E | A | V | K | F | L | L | Y | Y | D | I | D | G | D | Q | D | V | N | E | Q | K | K | A | Y | I | E | R | I | G | S | E | C | R | A | E | D | I | P | F | Y | L | E | I | L | T | Y | D | E | K | I | A | D | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
A | S | P | E | F | A | K | V | K |
Template Known Secondary structure |   |
 |  |  |  |  |  | T | T |
| S |  |  |  |  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |
| B | T | T | B |
|
| T | . | . | . | . | . | . | . | . | . | T | S |  |  |  |  | T | T |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
109 | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . |
  |
  |   |
164 | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |
Query SS confidence |   |
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | T | G | I | D | S | L | A | V | A | I | G | T | A | H | G | M | Y | A | S | A | P | A | L | D | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
F | S | R | L | E | N | I | R | Q | W | V | N | L | P | L | V | L | H | G | A | S | G | L | S | T | K |
Query Conservation |   |
|   | . | . | . | . | . | . | . | . | . | . | . | . |   |
|
|
|
|   |
|
|
|
|
|
|
|   |
|
|   |
|   |   |   |
|   |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |   |
|   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|   |   |   |
|
Alig confidence |   |
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|   |   |   |   |   |   |   |
|
|
|
|
|
|   |
|   |   |   | . | . | . | . | . | . | . |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|   |
|
|
|
|
| . |
|   |   |   |
|
Template Sequence |   |
A | H | K | V | N | E | A | X | K | V | F | S | K | E | R | F | G | V | D | V | L | K | V | E | V | . |
. |
. |
. |
. |
. |
. |
P | V | N | X | K | F | V | E | G | F | A | D | G | E | V | L | F | T | K | E | E | A | A | Q | A | F | R | D | Q | E | A | S | T | D | L | P | Y | I | Y | L | S | A | . |
G | V | S | A | K |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  | T | S | G | G | G |
|
| S |  |  |  |  |
|
| . | . | . | . | . | . | . | S | S |
| G | G | G | B | T | T | T |
| S | S |
|
|
| B |
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S | S |
|  |  |  |  |
| T | . | T | S |
|  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
| . |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | |
. | . | . | 250 | . |
  |
  |   |
217 | . | . | 220 | |
|
|
|
. | . | . | . | . | . | |
|
. | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  | . | . | . | . |  |  |  |
|
|
| . | . |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | I | Q | Q | . |
. |
. |
. |
T | I | K | L | G | I | . |
. |
C | K | I | N | V | A | T | E | L | K | N | A | F | S | Q | A | L | K | N | Y | L | T | E | H | P | E | A | T | D | P | R | D | Y | L | Q | S | A | K | S | A | M | R | D | V | V | S | K | V | I | A | D | C |
Query Conservation |   |
  |   |   |   | . | . | . | . |
|
|   |   |
|
| . | . |   |
|
|
|
|   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
| . | . | . | . |
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |
|   |   |
|   |   |
|
|
|   |   |
|
|   |   |   |
|
|   |
|
|
|   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|
Template Sequence |   |
L | F | Q | D | T | L | V | F | A | A | E | S | G | A | K | F | N | G | V | L | C | G | R | A | T | W | A | G | S | V | K | V | Y | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | E | E | G | P | Q | A | A | R | E | W | L | R | T | E | G | F | K | N | I | D | E | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  | T |
|
|
|
|  |  |  |  |
|  |  |  |  | T |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
252 | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . |
  |