|   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |
| . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | K | Q | M | L | N | N | A | Q | R | G | G | Y | A | V | P | A | F | N | I | H | N | L | E | T | M | Q | V | V | V | E | T | A | A | N | L | H | A | P | V | I | I | A | G | T | P | G | T | F | T | H | A | . |
. |
. |
. |
. |
. |
. |
. |
G | T | E | N | L | L | A | L | V | S | A | M | A | K | Q | Y | H | H | P | L |
Query Conservation |   |
  |
|   |
|
|   |   |
|   |   |   |   |
|
|
|   |
|
|
|   |   |
|   |
|   |   |   |
|
|
|   |
|
|
|   |   |   |
|
|
|
|
|
|   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|
|   |
|
|   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |
|
|
| . | . | . | . |   |   |
|   |
|
|
|   |
|
|   |   |
|
|   |   |   |
|   |
|   |
|   |
|
|   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|
Template Sequence |   |
L | A | N | R | F | R | A | L | V | E | A | N | E | I | L | Q | I | P | G | A | H | D | A | X | A | A | L | . |
. |
. |
. |
V | A | R | N | T | G | F | L | A | L | Y | L | S | G | A | A | Y | T | A | S | K | G | L | P | D | L | G | I | V | T | S | T | E | V | A | E | R | A | R | D | L | V | R | A | T | D | L | P | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | S | S | S |
|  |  |  |  | B |
| S | S |  |  |  |  |  | . | . | . | . |  |  |  |  | T | T |
| S |
|  |  |  |
|  |  |  |  |  |  |  |  | T |
|
| S | S | S |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  | . | . | . | . |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
14 | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | |
|
|
|
. | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . |
  |
  |   |
78 | . | 80 | . | . | . | . | . | . | |
|
|
|
|
. | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
| . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | I | H | L | D | H | H | T | K | . |
. |
. |
. |
. |
F | D | D | I | A | Q | K | V | R | S | G | V | R | S | V | M | I | D | A | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
H | L | P | F | A | Q | N | I | S | R | V | K | E | V | V | D | F | C | H | R | F | D | V | S | V | E | A | E | L | G | Q | L | G |
Query Conservation |   |
  |
|
|
|
|
|   |   |   | . | . | . | . | . |   |
|   |
|   |   |
|
|   |   |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |   |
|
|   |
|
|
|
|   |   |
|   |
|
|
|   |   |
|
|   |   |
|
|   |
|
|
|
|
|
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|   |
|
|
|   |   |   |   |
|   |
|   |
|   |   |   |   |   |
|
|
|   |
|
|   |
|
|
|   |   |   |   |
|   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |
|
|   |   |
|   |   |
|   |   |
|   |
|
|
|
|
|   |   |   |   |
Template Sequence |   |
L | V | D | I | D | T | G | F | G | G | V | L | N | V | A | R | T | A | V | E | X | V | E | A | K | V | A | A | V | Q | I | E | D | Q | Q | L | P | K | K | C | G | H | L | N | G | K | K | L | V | T | T | E | E | L | V | Q | K | I | K | A | I | K | E | V | A | P | S | L | Y | I | V | A | R | T | D | A | R | G | V | E |
Template Known Secondary structure |   |
 |  |  |
| T | T |
| S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |
| B |
| S | S |
|
| T | T |
| T | T |
|
|
| B |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T | S |  |  |  |  |  |  |
|
|  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . |
  |
  |   |
140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | |
190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | |
|
. | . | . | . | 210 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  | . | . |  |  |  |
|
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | Q | E | D | D | V | Q | V | N | E | A | D | A | L | Y | T | N | P | A | Q | A | R | E | F | A | E | A | T | G | I | D | S | L | A | V | A | I | G | T | A | H | G | M | Y | A | S | A | P | A | L | . |
D | F | S | R | L | E | N | I | R | Q | W | V | N | L | P | L | . |
. |
V | L | H | G | A | S | G | L | S | T | K |
Query Conservation |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |   |
|
|   |   |
|
|
|
|   |
|
|
|
|
|
|
|   |
|
|   |
|   |   |   |
|   |
| . |
|   |   |   |
|   |   |
|   |   |   |   |   |
|
|
| . | . |
|
|
|
|
|
|
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |   |
|
|   |
|
|   |
| . |
|
|
|
|   |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |
|   |   |
|   |   |
Template Sequence |   |
G | L | D | E | A | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
E | R | A | N | A | Y | V | K | . |
A | G | A | D | A | I | F | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
E | A | L | Q | S | E | E | E | F | R | L | F | N | S | K | V | N | A | P | L | L | A | N | X | T | E | F | G | K | T | P | Y | Y |
Template Known Secondary structure |   |
|  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  | . |  | T |
| S |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | T | T |
|
| S |  |  |  |  |  |  |  |  |  |  | S |
| S |
| B |  |  |  |
|
| T | T | S | S | S |
|
|
|
Template Predicted Secondary structure |   |
|  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  | . |
|
|
|
|  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
170 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 180 | . | . | . | |
. | . | . | . | . | . | 190 | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . |
  |
  |   |
217 | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | I | Q | Q | T | I | K | L | G | I | C | K | I | N | V | A | T | E | L | K | N | A | F | S | Q | A | L | K | N | Y | L | T | E |
Query Conservation |   |
  |   |   |   |
|
|   |   |
|
|   |
|
|
|
|   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |
Template Sequence |   |
S | A | E | E | F | A | N | X | G | F | Q | X | V | I | Y | P | V | T | S | L | R | V | A | A | K | A | Y | E | N | V | F | T | L |
Template Known Secondary structure |   |
|  |  |  |  |  |  | T | T |
| S |  |  |  |  |
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
225 | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . |
  |