Job Description P0C8J6 Confidence 97.26% Date Thu Jan 5 11:30:05 GMT 2012 Rank 57 Aligned Residues 220 % Identity 17% Template c3fa4D_ PDB info PDB header:lyase Chain: D: PDB Molecule:2,3-dimethylmalate lyase; PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form Resolution 2.18 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.										.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																	.																																										.	.	.	.	.	.	.	.	.
Query SS confidence																	.																																										.	.	.	.	.	.	.	.	.
Query Sequence		Y	V	V	S	T	K	Q	M	L	N	N	A	Q	R	G	.	G	Y	A	V	P	A	F	N	I	H	N	L	E	T	M	Q	V	V	V	E	T	A	A	N	L	H	A	P	V	I	I	A	G	T	P	G	T	F	T	H	A	.	.	.	.	.	.	.	.	.	G	T	E	N	L	L	A	L	V	S	A	M	A	K
Query Conservation																	.																																										.	.	.	.	.	.	.	.	.
Alig confidence																	.																	.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.
Template Sequence		P	M	V	T	A	A	T	S	L	R	R	A	L	E	N	P	D	S	F	I	V	A	P	G	V	Y	D	G	L	S	A	R	.	.	.	.	V	A	L	S	A	G	F	D	A	L	Y	M	T	G	A	G	T	A	A	S	V	H	G	Q	A	D	L	G	I	C	T	L	N	D	M	R	A	N	A	E	M	I	S	N
Template Known Secondary structure																S	T	T										S						.	.	.	.				T	T	T		S														T	S	S		S	S	S
Template Predicted Secondary structure																																		.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.					.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		72	.		.	.	.	.	.	.	80	.	.	.	.	.	.						.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.						.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure				.														.	.	.	.	.																					.	.	.	.	.																				.	.
Query SS confidence				.														.	.	.	.	.																					.	.	.	.	.																				.	.
Query Sequence		Q	Y	.	H	H	P	L	A	I	H	L	D	H	H	T	K	.	.	.	.	.	F	D	D	I	A	Q	K	V	R	S	G	V	R	S	V	M	I	D	A	S	.	.	.	.	.	H	L	P	F	A	Q	N	I	S	R	V	K	E	V	V	D	F	C	H	.	.	R	F	D	V	S	V	E	A	E	L	G	Q	L
Query Conservation				.														.	.	.	.	.																					.	.	.	.	.																				.	.
Alig confidence				.														.	.	.	.	.																					.	.	.	.	.																				.	.
Template Conservation
Template Sequence		I	S	P	S	T	P	V	I	A	D	A	D	T	G	Y	G	G	P	I	M	V	A	R	T	T	E	Q	Y	S	R	S	G	V	A	A	F	H	I	E	D	Q	V	Q	T	K	I	L	V	D	T	D	T	Y	V	T	R	I	R	A	A	V	Q	A	R	Q	R	I	G	S	D	I	V	V	I	A	R	T	D	S	L
Template Known Secondary structure			S	T	T	S							T	T		S	S	S														T	T									B						B																					T
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
				139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.				.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure		.	.																																																																	.	.	.
Query SS confidence		.	.																																																																	.	.	.
Query Sequence		.	.	G	G	Q	E	D	D	V	Q	V	N	E	A	D	A	L	Y	T	N	P	A	Q	A	R	E	F	A	E	A	T	G	I	D	S	L	A	V	A	I	G	T	A	H	G	M	Y	A	S	A	P	A	L	D	F	S	R	L	E	N	I	R	Q	W	V	N	.	.	.	L	P	L	V	L	H	G	A	S	G	L
Query Conservation		.	.																																																																	.	.	.
Alig confidence		.	.								.	.	.	.	.	.	.	.	.	.	.	.									.													.	.	.	.	.	.	.	.	.	.	.														.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.									.													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	T	H	G	Y	E	E	S	V	.	.	.	.	.	.	.	.	.	.	.	.	A	R	L	R	A	A	R	D	.	A	G	A	D	V	G	F	L	E	G	I	T	.	.	.	.	.	.	.	.	.	.	.	S	R	E	M	A	R	Q	V	I	Q	D	L	A	G	W	P	L	L	L	N	M	V	E	H	G	A	T
Template Known Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.									.		T		S					T	T			.	.	.	.	.	.	.	.	.	.	.												T	T	T	S		B						T	T	S	S	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.									.													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.													.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.												.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	K	D	I	Q	Q	T	I	K	L	G	I	C	K	I	N	V	A	T	E	L	K	N	A	F	S	Q	A	L	K	N	Y	L	T	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	S	I	S	A	A	E	A	K	E	M	G	F	R	I	I	I	F	P	F	A	A	L	G	P	A	V	A	A	M	R	E	A	M	E	K
Template Known Secondary structure													T		S					T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions