Job Description P0C8J6 Confidence 98.30% Date Thu Jan 5 11:30:05 GMT 2012 Rank 20 Aligned Residues 218 % Identity 15% Template c3eooL_ PDB info PDB header:lyase Chain: L: PDB Molecule:methylisocitrate lyase; PDBTitle: 2.9a crystal structure of methyl-isocitrate lyase from2 burkholderia pseudomallei Resolution 2.90 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.										.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.
Query Sequence		V	S	T	K	Q	M	L	N	N	A	Q	R	G	G	Y	A	V	P	A	F	N	I	H	N	L	E	T	M	Q	V	V	V	E	T	A	A	N	L	H	A	P	V	I	I	A	G	T	P	G	T	F	T	H	A	.	.	.	.	.	.	.	.	.	G	T	E	N	L	L	A	L	V	S	A	M	A	K	Q	Y	H
Query Conservation																																																								.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.
Template Sequence		I	S	A	G	A	K	F	R	A	A	V	A	A	E	Q	P	L	Q	V	V	G	A	I	T	A	Y	A	A	K	M	A	.	.	.	.	E	A	V	G	F	K	A	V	Y	L	S	G	G	G	V	A	A	N	S	L	G	I	P	D	L	G	I	S	T	M	D	D	V	L	V	D	A	N	R	I	T	N	A	T	N
Template Known Secondary structure															S	S	S							S	S								.	.	.	.			T	T		S																S		S	S	S
Template Predicted Secondary structure																																	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.					.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		75	.	.	.	.	80	.	.	.	.	.	.						.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.														110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	P	L	A	I	H	L	D	H	H	T	K	.	.	.	.	.	F	D	D	I	A	Q	K	V	R	S	G	V	R	S	V	M	I	D	A	S	H	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	Q	N	I	S	R	V	K	E	V	V	D	F	C	H	R	F	D	V	S	V	E	A	E	L	G
Query Conservation														.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	L	L	V	D	I	D	T	G	W	G	G	A	F	N	I	A	R	T	I	R	S	F	I	K	A	G	V	G	A	V	H	L	E	D	Q	V	G	Q	K	R	C	G	H	R	P	G	K	E	C	V	P	A	G	E	M	V	D	R	I	K	A	A	V	D	A	R	T	D	E	T	F	V	I	M	A	R	T	D
Template Known Secondary structure		S							T	T		S	S	S														T	T		S							B						T	T							B																		S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		137	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.			.	.	.	.	210	.	.
Predicted Secondary structure					.	.																																																																			.	.
Query SS confidence					.	.																																																																			.	.
Query Sequence		Q	L	G	.	.	G	Q	E	D	D	V	Q	V	N	E	A	D	A	L	Y	T	N	P	A	Q	A	R	E	F	A	E	A	T	G	I	D	S	L	A	V	A	I	G	T	A	H	G	M	Y	A	S	A	P	A	L	D	F	S	R	L	E	N	I	R	Q	W	V	N	L	P	L	.	.	V	L	H	G	A	S	G
Query Conservation					.	.																																																																			.	.
Alig confidence					.	.							.	.	.	.	.	.	.	.	.	.	.	.									.									.	.	.	.	.					.	.	.	.	.	.																	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.									.									.	.	.	.	.					.	.	.	.	.	.
Template Sequence		A	A	A	A	E	G	I	D	A	A	I	.	.	.	.	.	.	.	.	.	.	.	.	E	R	A	I	A	Y	V	E	.	A	G	A	D	M	I	F	P	.	.	.	.	.	E	A	M	K	.	.	.	.	.	.	T	L	D	D	Y	R	R	F	K	E	A	V	K	V	P	I	L	A	N	L	T	E	F	G	S
Template Known Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.									.		T		S					.	.	.	.	.					.	.	.	.	.	.	S													S		B						T	T	S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.									.									.	.	.	.	.					.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.													.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.						190	.	.	.							.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	T	K	D	I	Q	Q	T	I	K	L	G	I	C	K	I	N	V	A	T	E	L	K	N	A	F	S	Q	A	L	K	N	Y	L	T	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	P	L	F	T	L	D	E	L	K	G	A	N	V	D	I	A	L	Y	C	C	G	A	Y	R	A	M	N	K	A	A	L	N	F	Y	E	T
Template Known Secondary structure		S											T	T								S
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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