Job Description P0C8J6 Confidence 93.66% Date Thu Jan 5 11:30:05 GMT 2012 Rank 168 Aligned Residues 148 % Identity 18% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.					.	.	.	.	100	.	.	.												.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.									.	.	.	.	.	.	.	.	.	.	.																								.
Query SS confidence																						.	.	.	.									.	.	.	.	.	.	.	.	.	.	.																								.
Query Sequence		P	L	A	I	H	L	D	H	H	T	K	F	D	D	I	A	Q	K	V	R	.	.	.	.	S	G	V	R	S	V	M	I	.	.	.	.	.	.	.	.	.	.	.	D	A	S	H	L	P	F	A	Q	N	I	S	R	V	K	E	V	V	D	F	C	H	R	.	F	D	V	S	V	E	A	E	L	G	Q	L	G
Query Conservation																						.	.	.	.									.	.	.	.	.	.	.	.	.	.	.																								.
Alig confidence								.														.	.	.	.									.	.	.	.	.	.	.	.	.	.	.																								.												.	.
Template Conservation								.																																																																								.	.
Template Sequence		P	I	A	L	Q	L	.	A	G	S	D	P	K	S	L	A	E	A	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V	T	V	K	X	R	L	.	.
Template Known Secondary structure		S						.			S															T	T		S										S							T		G	G	G	G	G	G														T	T		S	S								S	.	.
Template Predicted Secondary structure								.																																																																								.	.
Template SS confidence
		59	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.						.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.																.
Query SS confidence																																																	.	.	.	.	.																.
Query Sequence		G	Q	E	D	D	V	Q	V	N	E	A	D	A	L	Y	T	N	P	A	Q	A	R	E	F	A	E	A	T	G	I	D	S	L	A	V	A	I	G	T	A	H	G	M	Y	A	S	A	.	.	.	.	.	P	A	L	D	F	S	R	L	E	N	I	R	Q	W	V	.	N	L	P	L	V	L	H	G	A	S	G	L
Query Conservation																																																	.	.	.	.	.																.
Alig confidence		.	.	.	.	.	.	.																																									.	.	.	.	.																.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	G	L	E	G	K	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	R	S
Template Known Secondary structure		.	.	.	.	.	.	.		B	T	T																	T	T									S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S						S	S			S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	K	D	I	Q	Q	T	I	K	L	G	I	C	K	I	N	V	A	T	E	L
Query Conservation
Alig confidence			.									.
Template Conservation			.									.
Template Sequence		L	.	E	E	A	L	F	H	L	K	.	R	V	D	G	V	X	L	G	R	A	V
Template Known Secondary structure			.								T	.	T	S	S					S
Template Predicted Secondary structure			.									.
Template SS confidence
		209		210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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