 |
Job Description | P0C8J6 | Confidence | 81.55% | Date | Thu Jan 5 11:30:05 GMT 2012 |
Rank | 279 | Aligned Residues | 137 |
% Identity | 18% | Template | c2qf7A_ |
PDB info |
PDB header:ligase | Chain: A: PDB Molecule:pyruvate carboxylase protein; |
PDBTitle: crystal structure of a complete multifunctional pyruvate carboxylase2 from rhizobium etli
|
Resolution | 2.00 Å |
|
 |
  |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | |
. | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  | . |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | L | D | H | H | T | K | F | D | D | I | A | Q | K | V | R | S | G | V | R | S | V | M | . |
I | D | A | S | H | L | P | F | A | Q | N | I | S | R | V | K | E | V | V | D | F | C | H | R | F | D | V | S | V | E | A | E | L | G | Q | L | G | G | Q | E | D | D | V | Q | V | N | E | A | D | A | L | Y | T | N | P | A |
Query Conservation |   |
|
|
|
|   |   |   |   |
|   |
|   |   |
|
|   |   |
|
|
|
|
|
| . |
|
|
|
|   |
|
|   |
|
|
|
|   |   |
|   |
|
|
|   |   |
|
|   |   |
|
|   |
|
|
|
|
|
|   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |   |
|   |   |
|   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |
|   |
|
|   | . | . | . | . | . |
|
|   |
|   |   |   |   |
|   |
|
|   |   |
|   |   |   |   |   |
|
|   |
|
|
| . | . | . | . | . | . |
|   |   |   |   |   |   |   |   |   |
|   |   |
Template Sequence |   |
N | Y | P | D | N | V | V | K | Y | F | V | R | Q | A | A | K | G | G | I | D | L | F | R | V | F | D | C | L | N | W | . |
. |
. |
. |
. |
V | E | N | M | R | V | S | M | D | A | I | A | E | E | N | K | L | C | E | A | A | I | C | Y | T | G | . |
. |
. |
. |
. |
. |
D | I | L | N | S | A | R | P | K | Y | D | L | K |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |
| T | T |
|
| . | . | . | . | . | G | G | G | G |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
|
|
|
| S | . | . | . | . | . | . |
| T | T |
| T | T | S | G | G | G |
|  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
630 | . | . | . | . | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | |
|
|
|
|
|
. | . | . | . | 690 | . | . | . | . | . | . | . | . |
  |
  |   |
159 | 160 | . | . | . | . | . | |
|
|
. | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | |
|
210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  | . | . | . |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
| . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | A | R | E | F | A | E | . |
. |
. |
A | T | G | I | D | S | L | A | V | A | I | G | T | A | H | G | M | Y | A | S | A | P | A | L | D | F | S | R | L | E | N | I | R | Q | W | V | N | L | P | L | V | L | H | G | . |
. |
A | S | G | L | S | T | K | D | I | Q | Q | T | I | K | L | G | I | C | K | I | N | V | A |
Query Conservation |   |
|
|   |   |
|
|   | . | . | . |   |
|
|
|
|   |
|
|
|
|
|
|
|   |
|
|   |
|   |   |   |
|   |
|
|   |   |   |
|   |   |
|   |   |   |   |   |
|
|
|
|
|
|
| . | . |
|
|
|   |   |   |
|   |   |   |   |
|
|   |   |
|
|   |
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
| . | . |
| . |
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |
|   |   |   |
|   |
|
|
|
|   |
|   | . | . |
| . |
|
|   |
|   | . | . |
|   |
|   |   |   |   |   |
|
|   |
|
|
|   |   |   |   |   |
|
|   |
|
|   |
|
|
|   |
|
|
|
|
|
|   |
|
|
|
|   |
|
|
|   |   |
|
|   |
|
Template Sequence |   |
Y | Y | T | N | L | A | V | E | L | E | K | A | G | A | H | I | I | A | . |
. |
V | . |
D | M | A | G | L | . |
. |
L | K | P | A | A | A | K | V | L | F | K | A | L | R | E | A | T | G | L | P | I | H | F | H | T | H | D | T | S | G | I | A | A | A | T | V | L | A | A | V | E | A | G | V | D | A | V | D | A | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  | . | . |
| . |
| T | T |
|
| . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S |
|  |  |  |
|
|
| B | T | T | S |
|  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  | B |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  | . | . |  | . |
|
|
|
|
| . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
699 | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | |
|
. | |
. | . | 720 | . | . | |
|
. | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . | . | . | . | . | . | 770 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|