Return to main results Retrieve Phyre Job Id

Job DescriptionP0C8J6
Confidence94.60%DateThu Jan 5 11:30:05 GMT 2012
Rank148Aligned Residues221
% Identity14%Templatec2ekcA_
PDB info PDB header:lyaseChain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10....... ..20.........30.........40.........50. ........60..
Predicted Secondary structure 

......









.................

Query SS confidence 











. . . . . .

































. . . . . . . . . . . . . . . . .










Query Sequence  TKQMLNNAQRGG. . . . . . YAVPAFNIHNLETMQVVVETAANLHAPVIIAGTP. . . . . . . . . . . . . . . . . GTFTHAGTENL
Query Conservation   
 

  
    ......


 


  
 
   


 


   





   .................      
    
Alig confidence 











......





..

























.................










Template Conservation 
   
          

 
  

 ..
           
   


 









 



 

 
   

  
      
Template Sequence  ISDKFTELKEKREKALVSYLMVGY. . PDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDV
Template Known Secondary structure  TB
TTS..S
TT
S


S

TTS
TT

Template Predicted Secondary structure 







..




















Template SS confidence 















































































   4.....10.........20....... ..30.........40.........50.........60.........70.........80.
 
   63......70... ......80 .........90.........100.........110.........120.........130......
Predicted Secondary structure 
.


.....

















Query SS confidence 










.






. . . . .























































Query Sequence  LALVSAMAKQY. HHPLAIH. . . . . LDHHTKFDDIAQKVRSGVRSVMIDASHLPFAQNISRVKEVVDFCHRFDVSVEAELG
Query Conservation         
  
. 


 

.....


    
 
  

  









 

 



  
 


  

  

 





Alig confidence 










.






.....






















..







....













...

Template Conservation         
      




 
 
 
   
 
 
       

 



..



 

 ....          

  ...
 
Template Sequence  LELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIV. . PDLPPEEA. . . . EELKAVMKKYVLSF. . . VP
Template Known Secondary structure 
TTS



TT


..TT

....TT
...

Template Predicted Secondary structure 















..



....



...
Template SS confidence 















































































   82.......90.........100.........110.........120........ .130...... ...140.........150 ..
 
   137..140.........150.........160.........170.........180.........190.........200.........210......
Predicted Secondary structure 













































Query SS confidence 















































































Query Sequence  QLGGQEDDVQVNEADALYTNPAQAREFAEATGIDSLAVAIGTAHGMYASAPALDFSRLENIRQWVNLPLVLHGASGLSTK
Query Conservation   
 
 
            
 



  

  



 






 

 
   
 

   
  
     









   
Alig confidence 




.............


























........


























Template Conservation 

 
 .............
   

  
   
 



  
  
 

........    
  

  
  

 




   
 
Template Sequence  LGAPT. . . . . . . . . . . . . STRKRIKLICEAADEMTYFVSVTGYER. . . . . . . . IKKKVEEYRELCDKPVVVGFGVSKKEH
Template Known Secondary structure 
TT.............


SS
SS


........

S
SS

S
Template Predicted Secondary structure 


.............











........








Template SS confidence 















































































   153.... ..160.........170.........180.... .....190.........200.........210.
 
   217..220.........230.........240.........250.........260.........
Predicted Secondary structure 









Query SS confidence 




















































Query Sequence  DIQQTIKLGICKINVATELKNAFSQALKNYLTEHPEATDPRDYLQSAKSAMRD
Query Conservation      

  

 



 
 
  
                
             
Alig confidence 
..













........











.














Template Conservation 
..  
  








........


        
.        

 
   
Template Sequence  A. . REIGSFADGVVVGS. . . . . . . . ALVKLAGQKKIE. DLGNLVKELKEGLRE
Template Known Secondary structure  ..TTSS
........TT
.TTB
Template Predicted Secondary structure  ..




........


.

Template SS confidence 




















































   221 ........230..... ....240....... ..250.........260..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions