Job Description P0C8J6 Confidence 45.19% Date Thu Jan 5 11:30:05 GMT 2012 Rank 438 Aligned Residues 176 % Identity 14% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.					.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.											.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																		.																.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.																.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Query Sequence		G	T	E	N	L	L	A	L	V	S	A	M	A	K	Q	Y	.	H	H	P	L	A	I	H	L	D	H	H	T	K	F	D	.	.	.	.	D	I	A	Q	K	V	R	S	G	V	R	S	V	M	I	D	A	S	.	.	.	.	.	.	.	.	.	.	H	L	P	F	A	Q	N	I	S	R	V	K	E	V	V	D
Query Conservation																		.																.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	A	A	Y	W	C	Q	S	V	T	E	L	K	A	D	F	P	D	N	I	V	I	A	S	I	M	C	S	Y	N	K	N	D	W	M	E	L	S	R	K	A	E	A	S	G	A	D	A	L	E	L	N	L	S	C	P	H	G	M	G	E	R	G	M	G	L	A	C	G	Q	D	P	E	L	V	R	N	I	C	R
Template Known Secondary structure																		T	T	S										S															T	T		S										S	S	G	G	G	G	T		T
Template Predicted Secondary structure
Template SS confidence
		617	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.
			123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.																							.	.	.
Predicted Secondary structure		.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	F	C	H	R	F	D	V	S	V	E	A	E	L	G	Q	L	G	G	Q	E	D	D	V	Q	V	N	E	A	D	A	L	Y	T	N	P	A	Q	A	R	E	F	A	E	A	T	G	I	D	S	L	A	V	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	A
Query Conservation		.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	V	R	Q	A	V	Q	I	P	F	F	A	K	L	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	T	D	I	V	S	I	A	R	A	A	K	E	G	G	A	D	G	V	T	A	T	N	T	V	S	G	L	M	G	L	K	A	D	G	T	P	W	P	A	V	G	A	G	K	R	T	T
Template Known Secondary structure								S	S								S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S													T		S														B		T	T	S		B	S	S		B	T	T	T	T	B
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		697	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.																.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.
		180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.															.
Query SS confidence										.	.															.
Query Sequence		H	G	M	Y	A	S	A	P	.	.	A	L	D	F	S	R	L	E	N	I	R	Q	W	V	.	N	L	P	L	V	L	H	G	A	S	G	L	S	T	K	D	I	Q	Q	T	I	K	L	G	I	C	K	I	N	V	A	T	E	L	K	N	A	F	S	Q	A	L	K	N	Y	L	T	E
Query Conservation										.	.															.
Alig confidence										.	.															.														.
Template Conservation																																								.
Template Sequence		Y	G	G	V	S	G	T	A	I	R	P	I	A	L	R	A	V	T	T	I	A	R	A	L	P	G	F	P	I	L	A	T	G	G	I	D	S	A	.	E	S	G	L	Q	F	L	H	S	G	A	S	V	L	Q	V	C	S	A	V	Q	N	Q	D	F	T	V	I	Q	D	Y	C	T	G
Template Known Secondary structure							S	G	G	G															S	T	T							S	S			S		.									T	T		S					S					T	S		T	T
Template Predicted Secondary structure																																								.
Template SS confidence
		762	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.		800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions