Job Description P0AEE3 Confidence 100.00% Date Thu Jan 5 11:23:07 GMT 2012 Rank 6 Aligned Residues 306 % Identity 35% Template c3qo6B_ PDB info PDB header:photosynthesis Chain: B: PDB Molecule:protease do-like 1, chloroplastic; PDBTitle: crystal structure analysis of the plant protease deg1 Resolution 2.50 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																												.	.	.
Query SS confidence																												.	.	.
Query Sequence		S	T	D	E	T	P	A	S	Y	N	L	A	V	R	R	A	A	P	A	V	V	N	V	Y	N	R	.	.	.	G	L	N	T	N	S	H	N	Q	L	E	I	R	T	L	G	S	G	V	I	M	D	Q	R	G	Y	I	I	T	N	K	H	V	I	N	D	A	D	Q	I	I	V	A	L	Q	D	G	R	V	F	E
Query Conservation																												.	.	.
Alig confidence																												.	.	.
Template Conservation
Template Sequence		K	L	Q	T	D	E	L	A	T	V	R	L	F	Q	E	N	T	P	S	V	V	Y	I	T	N	L	A	V	R	Q	D	A	F	T	L	D	V	L	E	V	P	Q	G	S	G	S	G	F	V	W	D	K	Q	G	H	I	V	T	N	Y	H	V	I	R	G	A	S	D	L	R	V	T	L	A	D	Q	T	T	F	D
Template Known Secondary structure																		G	G	G													T	T	T		S																T	T	T										T	T		S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.				.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																							.																																											.	.	.
Query SS confidence																							.																																											.	.	.
Query Sequence		A	L	L	V	G	S	D	S	L	T	D	L	A	V	L	K	I	N	A	T	G	.	G	L	P	T	I	P	I	N	A	R	R	V	P	H	I	G	D	V	V	L	A	I	G	N	P	Y	N	L	G	Q	T	I	T	Q	G	I	I	S	A	T	G	R	.	.	.	I	G	L	N	P	T	G	R	Q	N	F	L	Q
Query Conservation																							.																																											.	.	.
Alig confidence																							.																																											.	.	.
Template Conservation
Template Sequence		A	K	V	V	G	F	D	Q	D	K	D	V	A	V	L	R	I	D	A	P	K	N	K	L	R	P	I	P	V	G	V	S	A	D	L	L	V	G	Q	K	V	F	A	I	G	N	P	F	G	L	D	H	T	L	T	T	G	V	I	S	G	L	R	R	E	I	S	S	A	A	T	G	R	P	I	Q	D	V	I	Q
Template Known Secondary structure									T	T	T	T										G	G	G						B			S	T	T			T	T									G	G	G		T	T																	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	A	S	I	N	H	G	N	S	G	G	A	L	V	N	S	L	G	E	L	M	G	I	N	T	L	S	F	D	K	S	N	D	G	E	T	P	E	G	I	G	F	A	I	P	F	Q	L	A	T	K	I	M	D	K	L	I	R	D	G	R	V	I	R	G	Y	I	G	I	G	G	R	E	I	A	P	L	H	A
Query Conservation
Alig confidence																																							.	.	.
Template Conservation																																							.	.	.
Template Sequence		T	D	A	A	I	N	P	G	N	S	G	G	P	L	L	D	S	S	G	T	L	I	G	I	N	T	A	I	Y	S	P	S	G	A	S	S	G	.	.	.	V	G	F	S	I	P	V	D	T	V	G	G	I	V	D	Q	L	V	R	F	G	K	V	T	R	P	I	L	G	I	K	F	A	P	D	Q	S	V	E	Q
Template Known Secondary structure				S				T	T		T	T						T	T	S												S	S	S	S			S	.	.	.																					S	S													S	S	T	T	G	G
Template Predicted Secondary structure																																							.	.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.				310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300												.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	G	G	G	I	D	Q	L	Q	G	I	V	V	N	E	V	S	P	D	G	P	A	A	N	A	G	I	Q	V	.	.	.	.	.	.	.	.	.	.	.	N	D	L	I	I	S	V	D	N	K	P	A	I	S	A	L	E	T	M	D	Q	V	A	E	I	R	P	G	S	V	I	P	V	V	V	M	R	D	D	K
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.
Template Sequence		L	G	V	.	.	.	.	.	S	G	V	L	V	L	D	A	P	P	S	G	P	A	G	K	A	G	L	Q	S	T	K	R	D	G	Y	G	R	L	V	L	G	D	I	I	T	S	V	N	G	T	K	V	S	N	G	S	D	L	Y	R	I	L	D	Q	C	K	V	G	D	E	V	T	V	E	V	L	R	G	D	H
Template Known Secondary structure		G	T		.	.	.	.	.		S								T	T	S					T	T								S	S	S												T	T				S	S									T	T			T	T										S	S	S
Template Predicted Secondary structure					.	.	.	.	.
Template SS confidence
		350	.	.						.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	T	L	Q	V	T	I	Q	E	Y	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	K	I	S	V	T	L	E	P	K	P
Template Known Secondary structure		B
Template Predicted Secondary structure
Template SS confidence
		425	.	.	.	.	430	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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