|   |
56 | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
100 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
. | 110 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | A | V | V | N | V | Y | N | R | G | L | N | T | N | S | H | N | Q | L | E | I | R | T | L | G | S | G | V | I | M | D | Q | R | G | Y | I | I | T | N | K | H | V | I | N | . |
. |
. |
. |
. |
. |
. |
. |
D | A | D | Q | I | I | V | A | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Q | D | G | R | V | F | E | A | L |
Query Conservation |   |
  |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|   |   |   |
|   |
|
|
|   |   |
|
|
|   | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   |   | . | . | . | . | . | . | . | . | . | . |   |
|
|   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|   |
|   |   | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |
|
|
|
|
|
|
|   |   | . |   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
Template Sequence |   |
P | W | Q | V | M | L | F | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
K | S | P | Q | E | L | L | C | G | A | S | L | I | S | D | R | . |
W | V | L | T | A | A | H | C | L | L | Y | P | P | W | D | K | N | F | T | E | N | D | L | L | V | R | I | G | K | H | S | R | T | R | Y | E | R | N | I | E | K | I | S | M | L | E |
Template Known Secondary structure |   |
T | T |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | T | T | T | T |  |  |  |  |  |  |  |  | S | S | S | S | . |  |  |  |  |
|  |  |  |  |  |  | G | G | G | T |  |  |
|
| G | G | G |  |  |  |  |  | S |
|
| B | S | S | S |
|
| T | T | T |
|  |  |  |
|  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
| . |  |  |  |  |
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
428 | . | 430 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | |
. | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . |
  |
  |   |
118 | . | 120 | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | 130 | . | . | . | . | . | . | . | |
|
|
|
. | . | 140 | . | . | . | . | . | . | . | . | |
|
|
|
. | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | . | 170 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
| . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |
|
|
|
|
| . | . | . | . |
|
|  |  |  |
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | V | G | S | D | S | L | . |
. |
. |
. |
. |
. |
. |
. |
T | D | L | A | V | L | K | I | N | A | T | G | G | . |
. |
. |
. |
L | P | T | I | P | I | N | A | R | R | V | . |
. |
. |
. |
P | H | I | G | D | V | V | L | A | I | G | N | P | Y | . |
. |
. |
. |
. |
. |
. |
N | L | G | Q | T | I | T | Q | G | I | I | S |
Query Conservation |   |
|   |   |   |
|   |   | . | . | . | . | . | . | . | . |   |
|
|
|
|
|
|
|   |   |   |   |   | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . |   |   |   |
|   |   |
|   |
|
|
|   |
|   | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|
|   |
|   |   |   |   |   |   |   |   |
|
|
|
|
|   |
|   |   |
|
|   |   |   |   |   |
|   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
Template Sequence |   |
K | I | Y | I | H | P | R | Y | N | W | R | E | N | L | D | R | D | I | A | L | M | K | L | K | K | P | V | A | F | S | D | Y | I | H | P | V | C | L | P | D | R | E | T | A | A | S | L | L | Q | A | G | Y | K | G | R | V | T | G | W | G | N | L | K | E | T | W | T | A | N | Q | P | S | V | L | Q | V | V | N | L | P |
Template Known Secondary structure |   |
 |  |  |  |
| T | T |
| B | T | T | T | T | S | B | T |
|
|  |  |  |  |  | S | S |
|
|
|
|
| S | S |
|
|
|
| B |
|
|
|  |  |  |  |  |  |  |  |  |  |
| S |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |
|
|
| S | B |
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
487 | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . |
  |
  |   |
175 | . | . | |
|
|
|
. | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 200 | . | . | . | . | . | . | |
|
|
|
|
. | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |
|
|
|
|
|
|
|  |  |  | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | T | G | . |
. |
. |
. |
R | I | G | L | N | P | T | G | R | Q | N | F | L | Q | T | . |
. |
. |
. |
. |
. |
. |
. |
D | A | S | I | N | H | G | N | S | G | G | A | L | V | . |
. |
. |
. |
. |
N | S | L | G | E | L | M | G | I | N | T | L | S | F | D | K | S | N | D | G | E | T | P | E | G | I | G | F | A | I | P |
Query Conservation |   |
  |   |   | . | . | . | . |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   | . | . | . | . | . | . | . | . |
|
|   |
|   |   |
|   |
|
|
|
|
|   | . | . | . | . | . |
|   |   |
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
Alig confidence |   |
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|
|
|
|   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |
|   |   |   |
|   |
|
|
|
|   |
|   |   |
|   |   |   |   |   |
|   |
|
|
|   |
|   |   |
|
Template Sequence |   |
I | V | E | R | P | V | C | K | D | S | T | R | I | R | I | T | D | N | M | F | C | A | G | Y | K | P | D | E | G | K | R | G | D | A | C | E | G | D | S | G | G | P | F | V | M | K | S | P | F | N | N | R | W | Y | Q | M | G | I | V | S | W | G | E | G | C | D | R | D | G | K | Y | G | F | Y | T | H | V | F | R | L |
Template Known Secondary structure |   |
B |
|
|  |  |  |  |  |  | T |
| S | S |
|
|
| T | T |  |  |  |  | S |
|
|
| B | T | T | B |
|
|
| T | T |
| S |
| T | T |
|  |  |  |  |  |
| T | T | T |
|
|  |  |  |  |  |  |  |
|
| S | S |
| T | T | T |
|
| S |
|  |  |  |  |  |
| T | T |
|
Template Predicted Secondary structure |   |
 |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
562 | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . |
  |
  |   |
238 | . | 240 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | Q | L | A | T | K | I | M | D | K | L |
Query Conservation |   |
  |   |   |
|   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |   |   |
|   |   |   |
Template Sequence |   |
K | K | W | I | Q | K | V | I | D | Q | F |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
  |   |
635 | . | . | . | . | 640 | . | . | . | . | . |
  |