Job Description P0AEE3 Confidence 99.95% Date Thu Jan 5 11:23:07 GMT 2012 Rank 22 Aligned Residues 185 % Identity 19% Template c3mmgB_ PDB info PDB header:viral protein, hydrolase Chain: B: PDB Molecule:nuclear inclusion protein a; PDBTitle: crystal structure of tobacco vein mottling virus protease Resolution 1.70 Å

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		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.					.	120	.	.	.	.	.
Predicted Secondary structure																																																		.																					.	.	.	.
Query SS confidence																																																		.																					.	.	.	.
Query Sequence		V	R	R	A	A	P	A	V	V	N	V	Y	N	R	G	L	N	T	N	S	H	N	Q	L	E	I	R	T	L	G	S	G	V	I	M	D	Q	R	G	Y	I	I	T	N	K	H	V	I	.	N	D	A	D	Q	I	I	V	A	L	Q	D	G	R	V	F	E	A	L	L	.	.	.	.	V	G	S	D	S	L	T
Query Conservation																																																		.																					.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.										.	.											.																					.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.										.	.
Template Sequence		F	N	P	I	S	A	C	V	C	L	L	E	N	S	S	D	G	H	S	.	.	.	.	.	.	.	.	E	R	L	F	G	I	G	F	G	.	.	P	Y	I	I	A	N	Q	H	L	F	R	R	N	N	G	E	L	T	I	K	T	M	H	G	E	F	A	V	A	N	S	T	Q	L	Q	M	K	P	V	E	G	R
Template Known Secondary structure							T	T									T	T			.	.	.	.	.	.	.	.									T	.	.	T						G	G	G	G	S	S			S							T	T						S		G	G	G	S						T	B	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.										.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.									30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	A	V	L	K	I	N	A	T	G	G	L	P	T	I	P	I	N	A	R	R	V	P	H	I	G	D	V	V	L	A	I	G	N	P	Y	N	L	G	Q	T	I	T	Q	G	I	I	S	A	T	G	R	I	G	L	N	P	T	G	R	Q	N	F	L	Q	T	D	A	S	I	N	H	G	N	S	G	G	A	L
Query Conservation
Alig confidence									.																																						.	.	.	.
Template Conservation									.																																						.	.	.	.
Template Sequence		D	I	I	V	I	K	M	.	A	K	D	F	P	P	F	P	Q	K	L	K	F	R	Q	P	T	I	K	D	R	V	C	M	V	S	T	N	F	Q	Q	K	S	V	S	S	L	.	.	.	.	V	S	E	S	S	H	I	V	H	K	E	D	T	S	F	W	Q	H	W	I	T	T	K	D	G	Q	A	G	S	P	L
Template Known Secondary structure		S							.		T	T	S					S				B					T	T										S	S		G	G	G				.	.	.	.					B						T	T	S	S										T	T		T	T
Template Predicted Secondary structure									.																																						.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.					.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		206	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		V	N	S	L	.	G	E	L	M	G	I	N	T	L	S	F	D	K	S	N	D	G	E	T	P	E	G	I	G	F	A	I	P	F	Q	L	A	T	K	I	M	D	K	L	I	R	D	G	R	V	I	R	G	Y
Query Conservation						.
Alig confidence						.																		.	.	.	.	.																				.	.	.
Template Conservation																								.	.	.	.	.																				.	.	.
Template Sequence		V	S	I	I	D	G	N	I	L	G	I	H	S	L	T	H	T	T	N	G	S	N	.	.	.	.	.	Y	F	V	E	F	P	E	K	F	V	A	T	Y	L	D	A	A	D	G	.	.	.	W	C	K	N	W
Template Known Secondary structure				T	T	T												T	T	T				.	.	.	.	.							T	T						T	S			S	S	.	.	.		B	S	S
Template Predicted Secondary structure																								.	.	.	.	.																				.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.						.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.				.	.	.	200	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions