 |
Job Description | P0AEE3 | Confidence | 98.92% | Date | Thu Jan 5 11:23:07 GMT 2012 |
Rank | 101 | Aligned Residues | 73 |
% Identity | 21% | Template | c3k1rA_ |
PDB info |
PDB header:structural protein | Chain: A: PDB Molecule:harmonin; |
PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans
|
Resolution | 2.30 Å |
|
 |
  |   |
259 | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | G | I | G | G | R | E | I | A | P | L | H | A | Q | G | G | G | I | D | Q | L | Q | G | I | V | V | N | E | V | S | P | D | G | P | A | A | N | A | G | I | Q | V | N | D | L | I | I | S | V | D | N | K | P | A | I | S | A | L | E | T | M | D | Q | V | A | E | I | R | P | G | S | V | I | P | V | V | V | M | R | D |
Query Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |
|   |   |
|   |   |   |
|
|
|   |   |
|
|
|   |   |
|
|
|
|   |   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |
|   |   |   |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|   |
| . | . | . | . | . | . | . | . | . |
|   |   |   |   |   |
|
|   |
|   |   |
|   |   |
|   |   |
|   |   |   |
|
|   |   |
|
|   |
|
|   |
|
|
|   |   |
|   |   |   |   |   |   |
|
|
|   |
|
|
|   |   |   | . |   |   |   |   |   |
|   |   |   |
Template Sequence |   |
L | G | L | S | V | R | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
G | L | E | F | G | C | G | L | F | I | S | H | L | I | K | G | G | Q | A | D | S | V | G | L | Q | V | G | D | E | I | V | R | I | N | G | Y | S | I | S | S | C | T | H | E | E | V | I | N | L | I | R | T | E | K | . |
T | V | S | I | K | V | R | H | I |
Template Known Secondary structure |   |
|
|  |  |  |  |  | . | . | . | . | . | . | . | . | . |  | G | G | G | T |  |  |  |  |  |  |  |  |
| T | T | S |  |  |  |  | T | T |
|
| T | T |  |  |  |  |  |  | T | T |  |  |
| T | T |
|
|  |  |  |  |  |  |  |  | T | S | S | S | . |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
| . |
|  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
98 | . | 100 | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | |
. | 160 | . | . | . | . | . | . | . |
  |
  |   |
339 | 340 | . |
Predicted Secondary structure |   |
|  |  |
Query SS confidence |   |
|
|
|
Query Sequence |   |
D | K | Q |
Query Conservation |   |
|   |   |
Alig confidence |   |
|
|
|
Template Conservation |   |
  |   |   |
Template Sequence |   |
G | L | I |
Template Known Secondary structure |   |
|  |  |
Template Predicted Secondary structure |   |
|
|
|
Template SS confidence |   |
|
|
|
  |   |
168 | . | 170 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|