Job Description P0AEE3 Confidence 97.26% Date Thu Jan 5 11:23:07 GMT 2012 Rank 318 Aligned Residues 180 % Identity 13% Template c3govB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:masp-1; PDBTitle: crystal structure of the catalytic region of human masp-1 Resolution 2.55 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.																																	100	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	A	V	V	N	V	Y	N	R	G	L	N	T	N	S	H	N	Q	L	E	I	R	T	L	G	S	G	V	I	M	D	Q	R	G	Y	I	I	T	N	K	H	V	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	D	Q
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.																	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.																	.
Template Sequence		P	W	I	A	M	L	S	.	.	.	.	.	.	.	.	.	.	H	L	N	G	Q	P	F	C	G	G	S	L	L	G	S	S	.	W	I	V	T	A	A	H	C	L	H	Q	S	L	D	P	K	D	P	T	L	R	D	S	D	L	L	S	P	S	D	F	K	I	I	L	G	K	H	W	R	L	R	S	D	E	N
Template Known Secondary structure		T	T						.	.	.	.	.	.	.	.	.	.		T	T											T	T	T	.						G	G	G	G	B					T	T	S					G	G	G	B			G	G	G						S			B	S	S	S			S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.																	.
Template SS confidence
		461	.	.	.	.	.	.											.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.		.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.				.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.																																														.	.
Query SS confidence																																.	.	.																																														.	.
Query Sequence		I	I	V	A	L	Q	D	G	R	V	F	E	A	L	L	V	G	S	D	S	L	T	D	L	A	V	L	K	I	N	.	.	.	A	T	G	G	L	P	T	I	P	I	N	A	R	R	V	P	H	I	G	D	V	V	L	A	I	G	N	P	Y	N	L	G	Q	T	I	T	Q	G	I	I	S	A	T	G	R	.	.
Query Conservation																																.	.	.																																														.	.
Alig confidence																																.	.	.																																														.	.
Template Conservation
Template Sequence		E	Q	H	L	G	V	K	H	T	T	L	H	P	Q	Y	D	P	N	T	F	E	N	D	V	A	L	V	E	L	L	E	S	P	V	L	N	A	F	V	M	P	I	C	L	P	E	G	P	Q	Q	E	G	A	M	V	I	V	S	G	W	G	K	Q	F	L	Q	R	F	P	E	T	L	M	E	I	E	I	P	I	V
Template Known Secondary structure														T	T		B	T	T	T	T	B	T								S	S					S	S	S					B			S	S				T	T									S			T	T	S				S	B
Template Predicted Secondary structure
Template SS confidence
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.
											179	180	.	.	.	.	.	.	.	.	.	190	.	.	.						.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.						.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																.	.	.	.	.																			.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																.	.	.	.	.																			.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	I	G	L	N	P	T	G	R	Q	N	F	L	Q	T	D	.	.	.	.	.	A	S	I	N	H	G	N	S	G	G	A	L	V	N	S	L	G	E	.	.	.	.	.	L	M	G	I	N	T	L	S	F	D	K	S	N	D	G	E	T	P	E	G	I	G	F	A	I	P	F	Q
Query Conservation		.	.	.	.	.	.	.	.	.																.	.	.	.	.																			.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																.	.	.	.	.																			.	.	.	.	.																	.	.	.	.
Template Conservation																																																																						.	.	.	.
Template Sequence		D	H	S	T	C	Q	K	A	Y	A	P	L	K	K	K	V	T	R	D	M	I	C	A	G	E	K	E	G	G	K	D	A	C	A	G	D	S	G	G	P	M	V	T	L	N	R	E	R	G	Q	W	Y	L	V	G	T	V	S	W	G	D	D	C	G	K	K	D	R	.	.	.	.	Y	G	V	Y	S	Y	I	H
Template Known Secondary structure										T	T	T	T	T					T	T					S		T	T				B			T	T		T	T								T	T	T													S	S	S	S		S	S		.	.	.	.							T	T
Template Predicted Secondary structure																																																																						.	.	.	.
Template SS confidence
		610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.					.	.	680	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	T	K	I	M	D	K	L	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	N	K	D	W	I	Q	R	V	T	G
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		686	.	.	.	690	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions