 |
Job Description | P0AEE3 | Confidence | 99.67% | Date | Thu Jan 5 11:23:07 GMT 2012 |
Rank | 45 | Aligned Residues | 79 |
% Identity | 25% | Template | c2kl1A_ |
PDB info |
PDB header:protein binding | Chain: A: PDB Molecule:ylbl protein; |
PDBTitle: solution structure of gtr34c from geobacillus thermodenitrificans.2 northeast structural genomics consortium target gtr34c
|
Resolution | UNK |
|
 |
  |   |
276 | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | D | Q | L | Q | G | I | V | V | N | E | V | S | P | D | G | P | A | A | N | A | G | I | Q | V | N | D | L | I | I | S | V | D | N | K | P | A | I | S | A | L | E | T | M | D | Q | V | A | E | I | R | P | G | S | V | I | P | V | V | V | M | R | D | D | K | Q | L | T | L | Q | V | T | I | Q | E | Y | P | A | T | N |
Query Conservation |   |
  |   |   |   |   |
|   |   |
|   |   |
|   |   |   |
|
|
|   |   |
|
|
|   |   |
|
|
|
|   |   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |
|   |   |   |
|   |
|   |
|   |   |   |   |   |   |
|   |
|   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |
|
|   |
|   |   |
|   |   |   |
|
|
|   | . |
|
|
|   |   |
|
|   |
|
|   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |
|   |
|   |
|   |
|   |
|   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |
Template Sequence |   |
M | N | E | A | K | G | V | Y | V | M | S | V | L | P | N | M | P | A | A | . |
G | R | L | E | A | G | D | R | I | A | A | I | D | G | Q | P | I | N | T | S | E | Q | I | V | S | Y | V | R | E | K | Q | A | G | D | R | V | R | V | T | F | I | R | D | R | K | Q | H | E | A | E | L | V | L | K | P | F | P | H | H | P |
Template Known Secondary structure |   |
|
|
|
|
|
|  |  |
|
|
|
|
| T | T | S | T | T | B | . | T | T | B |
| T | T |
|  |  |  |  |  | T | T | B |
|
|
|
|  |  |  |  |  |  |  |  |  |  | S |
| T | T |
|
|  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |
|
|
| B |
| S | S |
| T |
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  | . |
|
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | |
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|