Return to main results Retrieve Phyre Job Id

Job DescriptionP0AEE3
Confidence99.78%DateThu Jan 5 11:23:07 GMT 2012
Rank36Aligned Residues98
% Identity30%Templatec2joaA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:serine protease htra1; PDBTitle: htra1 bound to an optimized peptide: nmr assignment of pdz2 domain and ligand resonances
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   252.......260.........270........ .280.........290.........300.........310.........320.....
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Query Sequence  GRVIRGYIGIGGREIAPLHAQGGGIDQ. . . . . . LQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEI
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Template Sequence  GSHMKKYIGIRMMSLTSSKAKELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKR.
Template Known Secondary structure 

S


B
S


TTS
S


S
SSST

TT

B
SS
B

S.
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   376...380.........390.........400.........410.........420.........430.........440.........450....
 
   326...330.........340.........350..
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Query Sequence  RPGSVIPVVVMRDDKQLTLQVTIQEYP
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Template Sequence  . . ESTLNMVVRRGNEDIMITVIPEEID
Template Known Secondary structure  ..
SSTT

B


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   455....460.........470.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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