Job Description Q9JMR6 Confidence 97.03% Date Thu Jan 5 12:37:50 GMT 2012 Rank 4 Aligned Residues 129 % Identity 12% Template c2z5vA_ PDB info PDB header:immune system Chain: A: PDB Molecule:myeloid differentiation primary response protein PDBTitle: solution structure of the tir domain of human myd88 Resolution UNK

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		150	.	.	.			.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure						.	.						.															.	.																													.
Query SS confidence						.	.						.															.	.																													.
Query Sequence		V	S	R	K	.	.	I	F	I	V	H	.	G	H	D	N	D	A	L	Q	S	V	A	R	F	I	.	.	S	R	I	G	L	E	E	I	I	L	S	E	R	P	D	G	S	R	T	I	I	E	K	F	E	A	E	S	.	G	D	V	S	F	A	I	V	L	M	T	P	D	D	S	G	S	A	L	A	S	E	S
Query Conservation						.	.						.															.	.																													.
Alig confidence						.	.						.															.	.																													.																.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		M	P	E	R	F	D	A	F	I	C	Y	C	P	S	D	I	Q	F	V	Q	E	M	I	R	Q	L	E	Q	T	N	Y	R	L	K	L	C	V	S	D	R	D	V	L	P	G	T	C	V	W	S	I	A	S	E	L	I	E	K	R	C	R	R	M	V	V	V	V	S	D	D	Y	L	.	.	.	.	.	.	.	.
Template Known Secondary structure				S			S							T	T	S													S	S	S	S							S		S	T	T	S		S	S							T	T	S	T	T	T	T														.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.				.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																				.	.	.																	.	.
Query SS confidence																				.	.	.																	.	.
Query Sequence		T	R	L	R	A	R	Q	N	V	L	Y	E	L	G	Y	F	A	G	.	.	.	K	L	G	R	G	K	V	L	V	L	R	K	G	D	I	E	.	.	I	P	S	D	L	A	G	V	L	Y	T	E	L	D	E	H	G	G	W	K	R	K	L	L	S	E	L	A	Y	A	G	V	P
Query Conservation																				.	.	.																	.	.
Alig confidence		.	.	.	.															.	.	.																	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	Q	S	K	E	C	D	F	Q	T	K	F	A	L	S	L	S	P	G	A	H	Q	K	R	L	I	P	I	K	Y	K	A	M	K	K	E	F	P	S	I	L	R	F	I	T	V	C	D	Y	T	N	P	C	T	K	S	W	F	W	T	R	L	A	K	A	L	S	L	P
Template Known Secondary structure		.	.	.	.	S	S												S	S	S	T	T		S	S	S	S						S	S			S	S				T	T	S	S	S	S	S					S						T	T										S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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