Return to main results Retrieve Phyre Job Id

Job DescriptionQ9JMR6
Confidence43.25%DateThu Jan 5 12:37:50 GMT 2012
Rank20Aligned Residues41
% Identity15%Templatec2xr1B_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei
Resolution2.59 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   148.150.........160.........170.........180.........190..
Predicted Secondary structure 



















Query SS confidence 












































Query Sequence  RPVSRKIFIVHGHDNDALQSVARFISRIGLEEIILSERPDGSRTI
Query Conservation   
   








  

  
   
  







 

   
 

Alig confidence 
































....







Template Conservation    


 

 



      

  
     
   .... 
 
 
 
Template Sequence  QPRPERVFTEHGDEKACVDLASSVYKKLKIETR. . . . ALTNLETV
Template Known Secondary structure  BS

SSS


....

TT
Template Predicted Secondary structure 








....




Template SS confidence 












































   594.....600.........610.........620...... ...630....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions